View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10246_low_1 (Length: 441)

Name: NF10246_low_1
Description: NF10246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10246_low_1
NF10246_low_1
[»] chr4 (42 HSPs)
chr4 (179-438)||(16898971-16899230)
chr4 (179-438)||(18347486-18347745)
chr4 (19-148)||(43386569-43386698)
chr4 (19-157)||(22183789-22183927)
chr4 (19-138)||(28266720-28266839)
chr4 (23-137)||(52813045-52813159)
chr4 (19-147)||(49820414-49820542)
chr4 (19-179)||(51409090-51409250)
chr4 (19-157)||(21436333-21436471)
chr4 (19-157)||(50605481-50605619)
chr4 (19-147)||(53369098-53369226)
chr4 (19-157)||(19850158-19850296)
chr4 (19-148)||(9469462-9469591)
chr4 (19-141)||(48977046-48977168)
chr4 (48-144)||(79799-79894)
chr4 (262-388)||(51701101-51701232)
chr4 (19-118)||(36543359-36543458)
chr4 (23-147)||(4275522-4275646)
chr4 (19-100)||(44792769-44792850)
chr4 (19-172)||(46945151-46945304)
chr4 (96-157)||(52812993-52813054)
chr4 (30-150)||(55892665-55892778)
chr4 (19-156)||(52705620-52705757)
chr4 (19-86)||(45674389-45674456)
chr4 (96-156)||(7505451-7505511)
chr4 (19-86)||(36156886-36156953)
chr4 (382-427)||(51701385-51701430)
chr4 (47-148)||(51994118-51994219)
chr4 (19-178)||(32398353-32398513)
chr4 (19-138)||(44377650-44377769)
chr4 (31-178)||(24009418-24009565)
chr4 (101-149)||(11055891-11055939)
chr4 (98-138)||(16743174-16743214)
chr4 (19-138)||(48151713-48151832)
chr4 (34-105)||(12790149-12790220)
chr4 (101-148)||(22720779-22720826)
chr4 (90-156)||(5765258-5765324)
chr4 (90-156)||(5767502-5767568)
chr4 (26-80)||(6874934-6874988)
chr4 (108-157)||(12790211-12790260)
chr4 (91-148)||(38493652-38493709)
chr4 (19-60)||(48731984-48732025)
[»] chr3 (26 HSPs)
chr3 (179-438)||(13236746-13237005)
chr3 (19-157)||(52198802-52198940)
chr3 (19-157)||(38644201-38644338)
chr3 (19-165)||(32688577-32688723)
chr3 (19-141)||(39471055-39471177)
chr3 (52-138)||(15823189-15823275)
chr3 (19-148)||(39943708-39943837)
chr3 (21-156)||(5418070-5418205)
chr3 (30-157)||(33895942-33896069)
chr3 (19-148)||(46294213-46294342)
chr3 (89-156)||(7029162-7029229)
chr3 (19-147)||(12710096-12710224)
chr3 (19-156)||(33439219-33439355)
chr3 (90-179)||(52934230-52934319)
chr3 (39-137)||(25252920-25253018)
chr3 (90-146)||(20407797-20407853)
chr3 (68-148)||(39133813-39133893)
chr3 (19-134)||(7521716-7521831)
chr3 (19-86)||(23206913-23206980)
chr3 (51-134)||(30740781-30740864)
chr3 (23-86)||(45714200-45714263)
chr3 (19-176)||(40942902-40943058)
chr3 (19-80)||(54432867-54432928)
chr3 (19-104)||(41609381-41609464)
chr3 (11-60)||(20661798-20661847)
chr3 (48-131)||(51067744-51067827)
[»] scaffold0002 (1 HSPs)
scaffold0002 (187-425)||(198277-198515)
[»] scaffold1079 (1 HSPs)
scaffold1079 (237-438)||(1-202)
[»] chr1 (30 HSPs)
chr1 (179-322)||(33420451-33420594)
chr1 (19-141)||(37441789-37441911)
chr1 (19-147)||(36418556-36418684)
chr1 (22-157)||(32179359-32179494)
chr1 (19-137)||(21681598-21681716)
chr1 (19-131)||(24575352-24575464)
chr1 (19-147)||(45654343-45654471)
chr1 (19-86)||(24470502-24470569)
chr1 (19-166)||(35309025-35309168)
chr1 (23-148)||(31868924-31869049)
chr1 (51-148)||(48575744-48575841)
chr1 (19-141)||(13645692-13645814)
chr1 (19-137)||(29678080-29678198)
chr1 (19-179)||(15257822-15257982)
chr1 (19-138)||(43090008-43090127)
chr1 (19-136)||(5205085-5205203)
chr1 (97-147)||(47603463-47603513)
chr1 (23-80)||(38061570-38061627)
chr1 (19-137)||(7595766-7595884)
chr1 (19-148)||(7955684-7955813)
chr1 (19-137)||(14770839-14770957)
chr1 (98-148)||(28005770-28005820)
chr1 (19-172)||(7994757-7994909)
chr1 (29-137)||(23916177-23916284)
chr1 (22-146)||(45582078-45582202)
chr1 (19-146)||(15662327-15662454)
chr1 (96-178)||(15305887-15305969)
chr1 (19-64)||(47603425-47603470)
chr1 (90-138)||(44595869-44595917)
chr1 (120-156)||(48152649-48152685)
[»] chr7 (33 HSPs)
chr7 (19-148)||(222919-223048)
chr7 (19-147)||(5776541-5776669)
chr7 (19-148)||(36926444-36926573)
chr7 (19-148)||(42071555-42071684)
chr7 (19-148)||(49035041-49035170)
chr7 (19-157)||(3931324-3931463)
chr7 (19-157)||(666192-666330)
chr7 (19-147)||(26215753-26215881)
chr7 (19-147)||(43052318-43052446)
chr7 (19-165)||(7539627-7539773)
chr7 (19-139)||(37333741-37333862)
chr7 (19-148)||(7443864-7443993)
chr7 (19-175)||(45054801-45054957)
chr7 (19-178)||(8110764-8110923)
chr7 (19-134)||(22074610-22074725)
chr7 (19-156)||(17025973-17026111)
chr7 (19-100)||(388498-388579)
chr7 (19-178)||(8390114-8390273)
chr7 (19-178)||(18250622-18250781)
chr7 (19-100)||(15433700-15433781)
chr7 (41-138)||(41449192-41449289)
chr7 (19-80)||(28950281-28950342)
chr7 (30-100)||(5795493-5795563)
chr7 (92-138)||(23236831-23236877)
chr7 (51-134)||(39429503-39429586)
chr7 (19-80)||(18740835-18740896)
chr7 (67-148)||(20259954-20260035)
chr7 (19-178)||(33899581-33899740)
chr7 (101-175)||(35544226-35544300)
chr7 (19-81)||(46574232-46574294)
chr7 (101-138)||(33124138-33124175)
chr7 (101-138)||(33172195-33172232)
chr7 (19-60)||(45174737-45174778)
[»] chr2 (21 HSPs)
chr2 (305-438)||(23053452-23053585)
chr2 (19-166)||(44741272-44741419)
chr2 (19-148)||(36538112-36538241)
chr2 (22-157)||(20986090-20986225)
chr2 (19-141)||(41958589-41958711)
chr2 (22-148)||(12139401-12139527)
chr2 (19-147)||(27633178-27633306)
chr2 (19-148)||(26435802-26435931)
chr2 (34-155)||(39801149-39801270)
chr2 (19-141)||(2647576-2647698)
chr2 (19-100)||(33164540-33164621)
chr2 (19-100)||(33830961-33831042)
chr2 (19-116)||(40458399-40458496)
chr2 (19-138)||(40675210-40675329)
chr2 (41-133)||(3409847-3409939)
chr2 (19-86)||(30711548-30711615)
chr2 (47-178)||(29804266-29804399)
chr2 (19-85)||(38410214-38410280)
chr2 (19-70)||(34064242-34064293)
chr2 (102-141)||(35380396-35380435)
chr2 (19-80)||(34116729-34116790)
[»] chr8 (14 HSPs)
chr8 (19-178)||(22563263-22563422)
chr8 (19-178)||(43966887-43967046)
chr8 (31-147)||(11161114-11161230)
chr8 (51-137)||(22930858-22930943)
chr8 (19-137)||(23180795-23180913)
chr8 (41-155)||(9413262-9413376)
chr8 (88-146)||(17865719-17865777)
chr8 (90-178)||(39477423-39477511)
chr8 (51-137)||(12377767-12377853)
chr8 (19-81)||(33280616-33280678)
chr8 (26-99)||(1091164-1091236)
chr8 (51-138)||(9133437-9133525)
chr8 (98-138)||(25731909-25731949)
chr8 (92-156)||(32740306-32740370)
[»] chr5 (33 HSPs)
chr5 (19-157)||(27905506-27905644)
chr5 (19-148)||(18879655-18879784)
chr5 (19-141)||(1224606-1224728)
chr5 (21-141)||(32157363-32157483)
chr5 (23-136)||(39408766-39408879)
chr5 (21-156)||(5385067-5385202)
chr5 (23-136)||(39407028-39407141)
chr5 (23-154)||(26299475-26299606)
chr5 (23-136)||(34720043-34720156)
chr5 (34-178)||(19715778-19715921)
chr5 (19-178)||(4983941-4984100)
chr5 (67-157)||(3805397-3805487)
chr5 (19-145)||(15931975-15932101)
chr5 (19-105)||(22921509-22921595)
chr5 (19-148)||(43385833-43385963)
chr5 (23-148)||(1840958-1841082)
chr5 (23-136)||(27450970-27451083)
chr5 (23-136)||(26297952-26298065)
chr5 (19-100)||(29322134-29322215)
chr5 (19-99)||(38523233-38523313)
chr5 (23-136)||(34724019-34724132)
chr5 (19-178)||(27195428-27195587)
chr5 (21-156)||(19283563-19283697)
chr5 (19-129)||(41782748-41782858)
chr5 (19-156)||(11136639-11136776)
chr5 (19-156)||(26217450-26217587)
chr5 (96-148)||(14501399-14501451)
chr5 (23-148)||(34856981-34857102)
chr5 (51-138)||(10493419-10493506)
chr5 (19-80)||(2675404-2675464)
chr5 (19-80)||(31620065-31620126)
chr5 (19-80)||(20191210-20191271)
chr5 (90-138)||(28430594-28430642)
[»] chr6 (19 HSPs)
chr6 (19-146)||(10346249-10346376)
chr6 (19-157)||(7957080-7957218)
chr6 (19-147)||(18961881-18962009)
chr6 (21-138)||(25181143-25181260)
chr6 (22-146)||(472863-472987)
chr6 (88-157)||(6998602-6998671)
chr6 (35-138)||(12428088-12428191)
chr6 (51-156)||(33109859-33109964)
chr6 (21-156)||(22295383-22295518)
chr6 (19-71)||(6998659-6998711)
chr6 (19-148)||(7436735-7436863)
chr6 (19-87)||(27925486-27925554)
chr6 (271-341)||(26345819-26345889)
chr6 (96-165)||(17439555-17439624)
chr6 (179-215)||(33064637-33064673)
chr6 (19-166)||(3082307-3082454)
chr6 (19-86)||(10962398-10962465)
chr6 (19-148)||(13311383-13311512)
chr6 (99-176)||(11460816-11460893)
[»] scaffold0316 (1 HSPs)
scaffold0316 (19-146)||(18747-18874)
[»] scaffold0444 (1 HSPs)
scaffold0444 (19-138)||(1389-1508)
[»] scaffold0658 (1 HSPs)
scaffold0658 (68-147)||(6418-6497)
[»] scaffold0106 (1 HSPs)
scaffold0106 (90-146)||(26530-26586)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 179 - 438
Target Start/End: Original strand, 16898971 - 16899230
Alignment:
Q  179 tgtaacataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcattt 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16898971 tgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcattt 16899070  T
Q  279 ctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899071 ctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctc 16899170  T
Q  379 tatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16899171 tatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat 16899230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 179 - 438
Target Start/End: Original strand, 18347486 - 18347745
Alignment:
Q  179 tgtaacataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcattt 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18347486 tgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcattt 18347585  T
Q  279 ctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18347586 ctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctc 18347685  T
Q  379 tatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18347686 tatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat 18347745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 43386698 - 43386569
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| ||||||||    
T  43386698 acctaacgagtcgaaccgaactgttcgtgaactttaaacgagtcgaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcaagccgagc 43386599  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
    ||||||||||||||||||| ||| ||||||    
T  43386598 aaattcttatcgagtcgagtcgagctcaga 43386569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 22183927 - 22183789
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||  |||||| ||||||||||||| |||||||||    
T  22183927 acctaacgagcggaaccgaactgttcgtgaactttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagttttgagccgagc 22183828  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
    ||||||||||| |||||| |||| |||||| | ||||||    
T  22183827 aaattcttatcaagtcgatccgagctcagacaggttcgg 22183789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 28266720 - 28266839
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||||||||||||||    
T  28266720 acctaacgagtcgaaccgaactgttcgtgaactttaaacgagtcgaactcgagctaaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagc 28266819  T
Q  119 aaattcttatcgagtcgagc 138  Q
    ||||||||||| ||||||||    
T  28266820 aaattcttatccagtcgagc 28266839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 52813159 - 52813045
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    |||||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||  |||||| |||||||||||||| ||||||||||||    
T  52813159 aacgagtcgaaccgaactgttcgtgaactttaaacgaggcgaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcaagccgagcaaat 52813060  T
Q  123 tcttatcgagtcgag 137  Q
    |||||||||||||||    
T  52813059 tcttatcgagtcgag 52813045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 49820542 - 49820414
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||| |||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||||||||||||||||||| |    
T  49820542 acctaacgagccgaactgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagtcgagtttcgagccgaac 49820443  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||||||||||||||| |||||    
T  49820442 caattcttatcgagtcgagccgagctcag 49820414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 51409090 - 51409250
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||| ||||||||| || ||| ||||||||||||||| ||||||| |||||| |||||  |||||| |||| |||||||||||||||| |    
T  51409090 acctaacgagccgagccgaactgtacgtgaactttaaacgagtcgaactcgagctaaaaaaatagttcgtgtcgaactcgaatcgagtttcgagccgaac 51409189  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagccctat 179  Q
    ||||||||||||||||||| ||| |||||| |||||||  || ||| ||||||| ||||||    
T  51409190 aaattcttatcgagtcgagtcgagctcagacaagttcgactcgacttatttccaaccctat 51409250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 21436471 - 21436333
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||| |||||||||||||| ||| |||||||||| |||| |||||||||||||| ||| |  |||||||||||| |||||||||||||||      
T  21436471 acctaacgagccaaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtccgtgtcgaattcgagccgagtttcgagccgaat 21436372  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
     ||||||||||||||||||||||||||||| | ||||||    
T  21436371 caattcttatcgagtcgagccgaactcagacaggttcgg 21436333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 50605619 - 50605481
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| ||||||| || |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  50605619 acctaacgagccgaaccgaactgttcgtgaactttaaacaagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 50605520  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
     |||||||||||||||||||||| |||||| | ||||||    
T  50605519 caattcttatcgagtcgagccgagctcagacaggttcgg 50605481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 53369226 - 53369098
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||| ||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  53369226 acctaacgagccgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 53369127  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||||||| |||||||||||||    
T  53369126 caattcttatcgagttgagccgaactcag 53369098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 19850296 - 19850158
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  19850296 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 19850197  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
     |||  ||||||||||||||||| |||||| | ||||||    
T  19850196 caatgtttatcgagtcgagccgagctcagacaggttcgg 19850158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 9469591 - 9469462
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||| ||||||||||| ||| |||||||||  |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  9469591 acctaacgagccgaatcgaactgttcgtgaactttaaacgatccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 9469492  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     |||||||||||||||||||||| ||||||    
T  9469491 caattcttatcgagtcgagccgagctcaga 9469462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 48977168 - 48977046
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||| || |||||| |||||||||||||| |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  48977168 acctaacgagccgaaccaaattgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 48977069  T
Q  119 aaattcttatcgagtcgagccga 141  Q
     |||||||||||| |||||||||    
T  48977068 caattcttatcgaatcgagccga 48977046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 79894 - 79799
Alignment:
Q  48 aattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaact 144  Q
    |||||| | |||||||||| |||||||||||||||||||  |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  79894 aatttttatcgagtcgaat-cgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgaaccgagcaaaatcttatcgagtcgagccgaact 79799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 262 - 388
Target Start/End: Original strand, 51701101 - 51701232
Alignment:
Q  262 gacaaatgtgtgcatttctattagggtcgtat----tcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtata 357  Q
    |||||||||||||||||| |||||||||||||    ||| |||||||| || |||||||||||||| |||||||    |||||||||||||||| |||||    
T  51701101 gacaaatgtgtgcatttcaattagggtcgtatatattcgttagttacgttttgaccatatatgtctatttcattcttacgaaaatcaattttacagtata 51701200  T
Q  358 gacgcttatgacct-ccccctctatgccctgc 388  Q
    ||| ||||||| || |||||||||||||||||    
T  51701201 gacacttatgatctcccccctctatgccctgc 51701232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 36543458 - 36543359
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| ||||   |||||| ||||| ||||||||||| |||||    
T  36543458 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagtcgagc 36543359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 4275522 - 4275646
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    |||||||| ||||||||| |||| ||| |||||||||||||||  | ||||||||||| ||||   |||||| ||||| |||||||||||| || | |||    
T  4275522 aacgagccaaaccgaactattcgtgaactttaaacgagtcgaacccaagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagctgaaccaat 4275621  T
Q  123 tcttatcgagtcgagccgaactcag 147  Q
    ||||||||||||||| ||| |||||    
T  4275622 tcttatcgagtcgagtcgagctcag 4275646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 44792769 - 44792850
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgag 100  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| |||||    
T  44792769 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 44792850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 46945151 - 46945304
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  |||||   ||||||||||||| |||||||||| | ||||||  |||    || || ||||||||||||||||||||| |    
T  46945151 acctaacgagccgaaccgagttgttcacaaattttaaacgagccgaattcgagttaaaaaaaaggtttgtttcaaactcgagtcgagtttcgagccgaac 46945250  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttcca 172  Q
     |||||||||||||| ||| ||| |||||| | |||||  || |||||||||||    
T  46945251 caattcttatcgagttgagtcgagctcagacaggttcgactcgactcatttcca 46945304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 52813054 - 52812993
Alignment:
Q  96 tcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  52813054 tcgagtcgagtttcaagccgagcaaattcttatcgagtcgagccgaactcagacaggttcgg 52812993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 55892665 - 55892778
Alignment:
Q  30 cgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatc 129  Q
    ||||||||||||| || | | ||||||||||||||| ||||||| |||||| |||||  |||||| |||||       ||||||||||||||||||||||    
T  55892665 cgaaccgaactgtacgtgtactttaaacgagtcgaactcgagctaaaaaaatagttcgtgtcgaactcgag-------tcgagccgagcaaattcttatc 55892757  T
Q  130 gagtcgagccgaactcagata 150  Q
    |||||||| ||| ||||||||    
T  55892758 gagtcgagtcgagctcagata 55892778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 52705757 - 52705620
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  || |||  || |||||||||| |||| ||||||  ||||||  ||||   |  || |||| |||||||||||||||| |    
T  52705757 acctaacgagccgaaccgagttgctcgtaaactttaaacgagccgaactcgagcccaaaaaaaggttcattttaaactcgaatcgagtttcgagccgaac 52705658  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcg 156  Q
     |||||||||||||||||||||| |||||| |||||||    
T  52705657 caattcttatcgagtcgagccgagctcagacaagttcg 52705620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 45674456 - 45674389
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttc 86  Q
    |||||||||||||||||||||| |||| ||| |||||||||| |||| |||||||||||||| |||||    
T  45674456 acctaacgagccgaaccgaactattcgtgaactttaaacgagccgaactcgagctgaaaaaatagttc 45674389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 7505511 - 7505451
Alignment:
Q  96 tcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcg 156  Q
    |||||||||||||||||||||   |||||||||||||||||||||| |||||| |||||||    
T  7505511 tcgagtcgagtttcgagccgaatcaattcttatcgagtcgagccgagctcagacaagttcg 7505451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 36156886 - 36156953
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttc 86  Q
    |||||| |||||||||| ||||||||| ||| ||||||||||||||| | |||||||||||| |||||    
T  36156886 acctaatgagccgaaccaaactgttcgtgaactttaaacgagtcgaacttgagctgaaaaaaaagttc 36156953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 51701385 - 51701430
Alignment:
Q  382 gccctgcggtaatgattcctctggcattacggcctttaccacaatg 427  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||    
T  51701385 gccctgcggtaaagattcctctggcattacggcctttaacacaatg 51701430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 51994219 - 51994118
Alignment:
Q  47 gaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactca 146  Q
    |||| ||||||||| ||| || ||||| |||||| |||||   ||||| |||||||||||||||||| || | |||||||| ||||||||| ||| ||||    
T  51994219 gaatattaaacgagccgagtttgagcttaaaaaaaagttcggttcgaactcgagtcgagtttcgagctgaaccaattcttaacgagtcgagtcgagctca 51994120  T
Q  147 ga 148  Q
    ||    
T  51994119 ga 51994118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 32398353 - 32398513
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagag-ttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||| || ||||||| ||||||||| ||| | |||||||| |||| | |||||||||||| |  |||  ||| || ||||  |||| ||||| | |||    
T  32398353 acctaatgaaccgaaccaaactgttcgtgaactctaaacgagccgaacttgagctgaaaaaaaaaattcatgtcaaactcgaaccgaggttcgaacggag 32398452  T
Q  118 caaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    | |||| ||| ||||||||| ||| |||||| |||||||  || |||||||||||||||||    
T  32398453 ccaatttttaacgagtcgagtcgagctcagacaagttcgactcgactcatttccagcccta 32398513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 44377769 - 44377650
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    ||||||||||||||||| |  |||||| ||| |||||||||| |||| || || | || ||||| ||||   || || |||||||||||||||||||||     
T  44377769 acctaacgagccgaaccaagttgttcgtgaactttaaacgagccgaactcaagttagagaaaag-gttcgtttcaaactcgagtcgagtttcgagccgaa 44377671  T
Q  118 caaattcttatcgagtcgagc 138  Q
    | |||||||||||||||||||    
T  44377670 ccaattcttatcgagtcgagc 44377650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 24009418 - 24009565
Alignment:
Q  31 gaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcg 130  Q
    ||||||||||||||| ||| ||||||||||  ||| ||||||| ||||||  ||||   | ||| |||||||| ||||||||  || | |||||||||||    
T  24009418 gaaccgaactgttcgtgaactttaaacgagcagaactcgagctaaaaaaaaggttcgttttgaactcgagtcgggtttcgagttgaaccaattcttatcg 24009517  T
Q  131 agtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    | ||| | ||| ||||||||  ||||  || ||| |||||||||||||    
T  24009518 aatcgtgtcgagctcagatagattcgactcgactaatttccagcccta 24009565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 11055891 - 11055939
Alignment:
Q  101 tcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagat 149  Q
    |||||||||||||||||  |||||||| ||||||||| |||||||||||    
T  11055891 tcgagtttcgagccgagtcaattcttaccgagtcgagtcgaactcagat 11055939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 16743174 - 16743214
Alignment:
Q  98 gagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  16743174 gagtcgagtttcgagccgaaccaattcttatcgagtcgagc 16743214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 48151713 - 48151832
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    ||||||| ||| |||||||   ||||| ||| ||||||||||||||| ||||| | | |||||| ||||   | ||||||||||| | ||| ||||||||    
T  48151713 acctaacaagctgaaccgagtagttcgtgaactttaaacgagtcgaactcgagttaggaaaaag-gttcgtattgaattcgagtcaaattttgagccgag 48151811  T
Q  118 caaattcttatcgagtcgagc 138  Q
    | |||||||||||||||||||    
T  48151812 ccaattcttatcgagtcgagc 48151832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 12790149 - 12790220
Alignment:
Q  34 ccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgag 105  Q
    |||||||||||| ||| |||||||||| |||| ||||| |||||||| |||||  |||||| ||||| ||||    
T  12790149 ccgaactgttcgtgaactttaaacgagccgaactcgagttgaaaaaatagttcgtgtcgaactcgagccgag 12790220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 22720826 - 22720779
Alignment:
Q  101 tcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcaga 148  Q
    |||||||||||||||| | |||||||||||||| ||||||| ||||||    
T  22720826 tcgagtttcgagccgaaccaattcttatcgagttgagccgagctcaga 22720779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 5765258 - 5765324
Alignment:
Q  90 tcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcg 156  Q
    ||||||||||||||||||||||||||| | | ||||||  |||| ||| ||| |||||| |||||||    
T  5765258 tcgaattcgagtcgagtttcgagccgaactatttcttaaagagttgagtcgagctcagacaagttcg 5765324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 5767502 - 5767568
Alignment:
Q  90 tcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcg 156  Q
    ||||||||||||||||||||||||||| | | ||||||  |||| ||| ||| |||||| |||||||    
T  5767502 tcgaattcgagtcgagtttcgagccgaactatttcttaaagagttgagtcgagctcagacaagttcg 5767568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 6874934 - 6874988
Alignment:
Q  26 gagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    |||||||||| ||||||| | ||| ||||| ||||||||| ||||||||||||||    
T  6874934 gagccgaaccaaactgtttgtgaactttaagcgagtcgaactcgagctgaaaaaa 6874988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 12790211 - 12790260
Alignment:
Q  108 tcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
    ||||||||||| |||||||||||| ||||||||| |||||| | ||||||    
T  12790211 tcgagccgagccaattcttatcgaatcgagccgagctcagacaggttcgg 12790260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 38493652 - 38493709
Alignment:
Q  91 cgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcaga 148  Q
    |||| |||| ||||||||| |||||| | ||||||||||| |||||| ||||||||||    
T  38493652 cgaactcgattcgagtttcaagccgatctaattcttatcgggtcgagtcgaactcaga 38493709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 48731984 - 48732025
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgag 60  Q
    ||||||| ||||||||||||||||||| |||| |||||||||    
T  48731984 acctaacaagccgaaccgaactgttcgtgaatcttaaacgag 48732025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 179 - 438
Target Start/End: Complemental strand, 13237005 - 13236746
Alignment:
Q  179 tgtaacataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcattt 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13237005 tgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcattt 13236906  T
Q  279 ctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236905 ctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctc 13236806  T
Q  379 tatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13236805 tatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat 13236746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 52198940 - 52198802
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||| ||||||| | ||| |||||||||||| |||||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  52198940 acctaacgagccgaaccaaactgtttgtgaactttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagc 52198841  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
    | |||| |||||||||||||||| |||||| | ||||||    
T  52198840 agattcatatcgagtcgagccgagctcagacaggttcgg 52198802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 38644201 - 38644338
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| ||||||||||| |||| ||| ||||||| |||||||||||||||||||||| |||||  |||||| ||||||||||||| ||||||| |    
T  38644201 acctaacgagtcgaaccgaactattcgtgaactttaaacaagtcgaattcgagctgaaaaaa-agttcgtgtcgaactcgagtcgagttttgagccgaac 38644299  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
    ||||||||||| ||||||||||| |||||| | ||||||    
T  38644300 aaattcttatctagtcgagccgagctcagacaggttcgg 38644338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 32688723 - 32688577
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  ||| || |||||  |||||||||||||| |    
T  32688723 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcatgtcaaactcgagctgagtttcgagccgaac 32688624  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactc 165  Q
     |||| ||||||||||||||||| |||||| |  ||||| |||||||    
T  32688623 caatttttatcgagtcgagccgagctcagacagattcggttcaactc 32688577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 39471055 - 39471177
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||  ||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  39471055 acctaacgagccgaatcgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 39471154  T
Q  119 aaattcttatcgagtcgagccga 141  Q
     ||||||||||||||||||||||    
T  39471155 caattcttatcgagtcgagccga 39471177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 15823189 - 15823275
Alignment:
Q  52 ttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    |||||||||||||| ||||||||||||||||||||  |||||| |||||||||||||||||||||||||| | |||||||| |||||    
T  15823189 ttaaacgagtcgaactcgagctgaaaaaagagttcatgtcgaactcgagtcgagtttcgagccgagcaaaattttatcgagccgagc 15823275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 39943708 - 39943837
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||| |||||||||| ||||||| || ||| ||||||| || |||| || ||||||||||| |||||  ||| || ||||| |||||||||||| || |    
T  39943708 acctatcgagccgaactgaactgtacgtgaactttaaacaagccgaactcaagctgaaaaaaaagttcgtgtcaaactcgagccgagtttcgagctgaac 39943807  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     |||||||||||||||||||||| ||||||    
T  39943808 caattcttatcgagtcgagccgagctcaga 39943837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 5418205 - 5418070
Alignment:
Q  21 ctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaa 120  Q
    |||||||||||||||||  || ||| ||| ||||||||||  ||| ||||||  ||||||  ||||   | ||| ||||||||||||||||||||| | |    
T  5418205 ctaacgagccgaaccgagttgctcgtgaactttaaacgagctgaaatcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaacca 5418106  T
Q  121 attcttatcgagtcgagccgaactcagataagttcg 156  Q
    |||||||||||||| ||||||||||||| |||||||    
T  5418105 attcttatcgagtcaagccgaactcagacaagttcg 5418070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 33896069 - 33895942
Alignment:
Q  30 cgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatc 129  Q
    |||| ||| ||||||| ||| |||||||||| |||||||||||| ||||||  ||||  |||||| ||||||||||||| |||| || | | |||||||     
T  33896069 cgaatcgagctgttcgtgaactttaaacgagccgaattcgagctaaaaaaaaggttcgtgtcgaactcgagtcgagtttggagctgaaccatttcttatt 33895970  T
Q  130 gagtcgagccgaactcagataagttcgg 157  Q
    |||||||| ||| |||||| ||||||||    
T  33895969 gagtcgagtcgagctcagacaagttcgg 33895942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 46294213 - 46294342
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||  |||||||||||||||| |||  |||||||||  ||| ||||||| ||||||||||||  ||| |  |||||||||||||||| | || |    
T  46294213 acctaacgaatcgaaccgaactgttcgcgaaccttaaacgagctgaactcgagctaaaaaaagagttcgtgtcaatctcgagtcgagtttcgaactgaac 46294312  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     ||||||||| | |||||||||| ||||||    
T  46294313 caattcttattgcgtcgagccgagctcaga 46294342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 7029229 - 7029162
Alignment:
Q  89 gtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcg 156  Q
    |||||| ||||| |||||||||||| || |||||||||||||||||||| ||||||||||| ||||||    
T  7029229 gtcgaactcgagccgagtttcgagctgaacaaattcttatcgagtcgagtcgaactcagatgagttcg 7029162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 12710224 - 12710096
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct--gaaaaaagagttctagtcgaattcgagtcgagtttcgagccga 116  Q
    |||||||||||||||||||  |||||| ||| |||||||||| |||| ||||| |  |||||||| ||||   || || |||||||||||||||||||||    
T  12710224 acctaacgagccgaaccgagttgttcgcgaactttaaacgagccgaactcgagttaagaaaaaag-gttcgtttcaaactcgagtcgagtttcgagccga 12710126  T
Q  117 gcaaattcttatcgagtcgagccgaactcag 147  Q
     | |||||||||||||||||| ||| |||||    
T  12710125 -ccaattcttatcgagtcgagtcgagctcag 12710096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 33439219 - 33439355
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||| |||||||||| ||||||||| ||| ||||||||||||||| | |||||||||||| |||||  ||| || ||||  | ||  |||| ||||||    
T  33439219 acctaatgagccgaaccaaactgttcgtgaactttaaacgagtcgaacttgagctgaaaaaa-agttcgtgtcaaactcgaaccaaggctcgaaccgagc 33439317  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcg 156  Q
     ||||||||  |||||||| ||| |||||||| |||||    
T  33439318 caattcttaatgagtcgagtcgagctcagataggttcg 33439355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 52934319 - 52934230
Alignment:
Q  90 tcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagccctat 179  Q
    ||||| || |||||||||||||||||||  |||||||||||||||||| ||| |||||||   ||||  || ||||||||||||||||||    
T  52934319 tcgaactcaagtcgagtttcgagccgagtcaattcttatcgagtcgagtcgagctcagatggattcgactcgactcatttccagccctat 52934230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 25253018 - 25252920
Alignment:
Q  39 ctgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgag 137  Q
    ||||||| ||| |||||||||| |||| ||||||| || ||| |||||   | ||| ||||||||||||| ||||||| | ||||||||||||||||||    
T  25253018 ctgttcgtgaactttaaacgagccgaactcgagcttaacaaaaagttcgtattgaactcgagtcgagttttgagccgaaccaattcttatcgagtcgag 25252920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 20407797 - 20407853
Alignment:
Q  90 tcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactca 146  Q
    ||||| ||||||||||||||||||||| | ||| |||||||||||||||||| ||||    
T  20407797 tcgaactcgagtcgagtttcgagccgaaccaatacttatcgagtcgagccgagctca 20407853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 39133893 - 39133813
Alignment:
Q  68 cgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcaga 148  Q
    ||||||||||||| | ||   |||||| ||||| ||||||||||||||| | ||||||||||||||||||| || ||||||    
T  39133893 cgagctgaaaaaataatttgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagctgagctcaga 39133813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 7521716 - 7521831
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| | |||||| ||||||| ||||||||||| |||| || | ||| | ||||||   |||   ||||| ||||||||||||||||||||| |    
T  7521716 acctaacgagtcaaaccgagctgttcgtgaattttaaacaagtcaaacttgagttaaaaaaaagattcgtttcgaactcgagtcgagtttcgagccgaac 7521815  T
Q  119 aaattcttatcgagtc 134  Q
     |||| ||||||||||    
T  7521816 gaatttttatcgagtc 7521831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 23206913 - 23206980
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttc 86  Q
    |||||||||| |||||||||||||||| ||| |||||||||| |||| ||||||| ||| || |||||    
T  23206913 acctaacgagtcgaaccgaactgttcgtgaactttaaacgagccgaactcgagctcaaataatagttc 23206980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 30740864 - 30740781
Alignment:
Q  51 tttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtc 134  Q
    |||||||||| |||| ||||||| ||||||  ||||  |||||| ||||||||||||||||||| | | | |||||||||||||    
T  30740864 tttaaacgagccgaactcgagctaaaaaaaaggttcgtgtcgaactcgagtcgagtttcgagccaaaccatttcttatcgagtc 30740781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 45714263 - 45714200
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttc 86  Q
    ||||||| ||||| ||||||||| ||| ||||||||||||||| | |||||||||||| |||||    
T  45714263 aacgagctgaaccaaactgttcgtgaactttaaacgagtcgaacttgagctgaaaaaaaagttc 45714200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 40943058 - 40942902
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| ||||||||   ||||| ||| |||||| ||| |||| |||||||  |||||| ||||   | ||| ||||| ||||||||||| ||| |    
T  40943058 acctaacgagtcgaaccgagtggttcgtgaactttaaatgagccgaactcgagctagaaaaag-gttcgttttgaactcgagccgagtttcgagtcgaac 40942960  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagccc 176  Q
     |||||||||||||| ||| ||| |||||| |  ||||  || |||||||||||||||    
T  40942959 caattcttatcgagttgagtcgagctcagacagattcgactcgactcatttccagccc 40942902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 54432867 - 54432928
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    |||||||||| ||||||||  |||||| |||||||||||||| |||| ||||||| ||||||    
T  54432867 acctaacgagtcgaaccgagttgttcgtgaattttaaacgagccgaactcgagctaaaaaaa 54432928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 41609464 - 41609381
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcga 104  Q
    ||||||| ||||||||||||  ||||| ||  || ||||||| |||| |||||||||||||| |||||  |||||| |||||||||    
T  41609464 acctaacaagccgaaccgaa--gttcgtgaccttcaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagtcga 41609381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 20661847 - 20661798
Alignment:
Q  11 tgagatgcacctaacgagccgaaccgaactgttcgagaattttaaacgag 60  Q
    ||||||| |||||||||||||||||||  |||||| ||| ||||||||||    
T  20661847 tgagatgaacctaacgagccgaaccgagttgttcgtgaactttaaacgag 20661798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 51067827 - 51067744
Alignment:
Q  48 aattttaaacgagtcgaattcgagctgaaaaaa-gagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcga 131  Q
    ||||||||| |||||||| ||||||  |||||| || || || ||||| |||||| |||||||||||||| | ||||||||||||    
T  51067827 aattttaaatgagtcgaactcgagccaaaaaaatgatttgta-tcgaagtcgagttgagtttcgagccgaactaattcttatcga 51067744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 187 - 425
Target Start/End: Complemental strand, 198515 - 198277
Alignment:
Q  187 aaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagg 286  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  198515 aaacaatagtatctccaattatagcccctctgggatgtaaaatatatctcttctcaccatccccatagtgtatgagacaaatgtatgcatttcgattagg 198416  T
Q  287 gtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccct 386  Q
    ||||||||| || |||||||||| |||| |||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |    
T  198415 gtcgtattctatggttacgattctaccagatatgtctttttgattccgtcgaaaatctattttacggtataggcgcttatgacctccccctctatgccat 198316  T
Q  387 gcggtaatgattcctctggcattacggcctttaccacaa 425  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  198315 gcggtaatgattcctctggaattacgacctttaccacaa 198277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1079 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold1079
Description:

Target: scaffold1079; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 237 - 438
Target Start/End: Original strand, 1 - 202
Alignment:
Q  237 ttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtc 336  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||||| ||||    
T  1 ttctcaccatccccatagtgtatgagacaaatgtatgcatttcgattagggtcgtattctatggttacgattctaccatatatgtctttttcatttcgtc 100  T
Q  337 gaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtcc 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  101 gaaaatcaattttacggtatagacgcttatgacctccccctctatgccttgcggtaatgattcctctggcattacgacctttaccacaacgatgctgtcc 200  T
Q  437 at 438  Q
    ||    
T  201 at 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 179 - 322
Target Start/End: Original strand, 33420451 - 33420594
Alignment:
Q  179 tgtaacataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcattt 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33420451 tgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagataaatgtgtgcattt 33420550  T
Q  279 ctattagggtcgtattcgatagttacgattcgaccatatatgtc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33420551 ctattagggtcgtattcgatagttacgattcgaccatatatgtc 33420594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 37441789 - 37441911
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  37441789 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 37441888  T
Q  119 aaattcttatcgagtcgagccga 141  Q
     ||||||||||||||||||||||    
T  37441889 caattcttatcgagtcgagccga 37441911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 36418684 - 36418556
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||  |||| |||||||||||||| | |||  |||||| ||||| ||||||||||||||| |    
T  36418684 acctaacgagccgaaccgaactgttcgtgaactttaaacgaaccgaactcgagctgaaaaaataattcgtgtcgaactcgagccgagtttcgagccgaac 36418585  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||||||||||||||| |||||    
T  36418584 caattcttatcgagtcgagccgagctcag 36418556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 32179494 - 32179359
Alignment:
Q  22 taacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaa 121  Q
    |||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||||  ||| || || || ||||||||||||||| | ||    
T  32179494 taacgagccgaaccgaactgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcgtgtcaaactcaagccgagtttcgagccgaaccaa 32179395  T
Q  122 ttcttatcgagtcgagccgaactcagataagttcgg 157  Q
    |||||||||| ||||||||| |||||  ||||||||    
T  32179394 ttcttatcgaatcgagccgagctcaggcaagttcgg 32179359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 21681598 - 21681716
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||||| |||  ||||||||||||||| |||  ||||||||||||| |||||  |||||| ||||| |||||||  ||| || |    
T  21681598 acctaacgagccgaaccgaactattcatgaattttaaacgagttgaacccgagctgaaaaaatagttcgtgtcgaactcgagccgagttttaagctgaac 21681697  T
Q  119 aaattcttatcgagtcgag 137  Q
     ||||||||||||||||||    
T  21681698 caattcttatcgagtcgag 21681716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 24575464 - 24575352
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  |||||| ||| |||||||||| |||| ||||| | |||||| |||||   || || ||||||||||||||||||||| |    
T  24575464 acctaacgagccgaaccgagttgttcgtgaactttaaacgagccgaactcgagttaaaaaaaaagttcgtttcaaactcgagtcgagtttcgagccgaac 24575365  T
Q  119 aaattcttatcga 131  Q
     ||||||||||||    
T  24575364 caattcttatcga 24575352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 45654343 - 45654471
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||||| |||   || |||||||||||||||  ||||||||||||| | |||  |||||| ||||| ||| |||| ||| || |    
T  45654343 acctaacgagccgaaccgaactattcataaactttaaacgagtcgaacccgagctgaaaaaataattcgtgtcgaactcgagccgaatttcaagctgaac 45654442  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||||||||||| ||| |||||    
T  45654443 caattcttatcgagtcgagtcgagctcag 45654471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 24470502 - 24470569
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttc 86  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||    
T  24470502 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttc 24470569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 35309168 - 35309025
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||| ||||||||||  || |||||| ||| |||| ||||||||||||||    ||  || ||| ||||  ||||||||||||||| |    
T  35309168 acctaacgagccgaacggaactgttcgtaaactttaaatgagccgaactcgagctgaaaaaa----tcgtgtggaactcgaaccgagtttcgagccgaac 35309073  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactca 166  Q
     ||||||||||||||||| |||| ||||| || |||||| || |||||    
T  35309072 caattcttatcgagtcgaaccgagctcaggtaggttcggttcgactca 35309025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 31869049 - 31868924
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    |||||||||||||||  |||||| ||| |||||||||| ||||  |||| | ||||||  |||    ||||| ||||||||||||||||||||||  |||    
T  31869049 aacgagccgaaccgagatgttcgtgaactttaaacgagccgaacccgagtttaaaaaatggtttgtatcgaactcgagtcgagtttcgagccgagtcaat 31868950  T
Q  123 tcttatcgagtcgagccgaactcaga 148  Q
    |||||| |||||||||||| ||||||    
T  31868949 tcttattgagtcgagccgagctcaga 31868924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 48575744 - 48575841
Alignment:
Q  51 tttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcaga 148  Q
    ||||||||||| ||| ||||||||||||||||||||  || ||| | ||||||||||||||| | |  ||||||||||||||||||| ||| ||||||    
T  48575744 tttaaacgagttgaactcgagctgaaaaaagagttcgtgttgaacttgagtcgagtttcgagtcaaataaattcttatcgagtcgagtcgagctcaga 48575841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 13645692 - 13645814
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||| |||| ||  || ||| |||||||||| |||||||| |||||| | ||||| ||||    || || ||||||||||||||||||||| |    
T  13645692 acctaacgagctgaacagagttgctcgtgaattttaaatgagtcgaactcgagccggaaaaaaagtttgtttcaaactcgagtcgagtttcgagccgaac 13645791  T
Q  119 aaattcttatcgagtcgagccga 141  Q
     |||||| |||||||||||||||    
T  13645792 caattctaatcgagtcgagccga 13645814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 29678080 - 29678198
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||| ||  || ||| ||| |||||||||| |||| ||||| ||||||||  ||||   ||||| | ||||||||||||||||||| |    
T  29678080 acctaacgagccgaacagagttgctcgtgaactttaaacgagccgaactcgagatgaaaaaaaggttcgtttcgaacttgagtcgagtttcgagccgaac 29678179  T
Q  119 aaattcttatcgagtcgag 137  Q
     | ||||||||||||||||    
T  29678180 catttcttatcgagtcgag 29678198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 15257822 - 15257982
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| ||||||||   ||||| ||| |||||||||| |||| |||||||  |||||  ||||   ||||| ||||  ||||||||||||||| |    
T  15257822 acctaacgagtcgaaccgagtggttcgtgaactttaaacgagccgaactcgagctagaaaaatggttcgtttcgaactcgaaccgagtttcgagccgaac 15257921  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagccctat 179  Q
     ||||||||||||||||||  || |||||| |  ||||  || |||||||| |||||||||    
T  15257922 caattcttatcgagtcgagttgagctcagacagattcgactcgactcattttcagccctat 15257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 43090008 - 43090127
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  || ||| ||| |||||||||| |||| ||||||  ||||||  ||||   | ||| ||||||||||||||||||||| |    
T  43090008 acctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaatgttcgttttgaactcgagtcgagtttcgagccgaac 43090107  T
Q  119 aaattcttatcgagtcgagc 138  Q
     ||||||| ||||| |||||    
T  43090108 caattcttgtcgagccgagc 43090127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 5205085 - 5205203
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagag-ttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||||||||||||||||  |||||| ||| |||||| |||||||| | ||| | |||||| || |||   || || |||||||||||||||||||||     
T  5205085 acctaacgagccgaaccgagttgttcgcgaactttaaatgagtcgaacttgaggtaaaaaaaaaggttcgtttcaaactcgagtcgagtttcgagccgaa 5205184  T
Q  118 caaattcttatcgagtcga 136  Q
    | ||||||||| |||||||    
T  5205185 ccaattcttatggagtcga 5205203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 47603463 - 47603513
Alignment:
Q  97 cgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcag 147  Q
    |||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  47603463 cgagtcgagtttcgagccgaaccaattcttatcgagttgagccgaactcag 47603513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 38061570 - 38061627
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    ||||||| ||||||||||||||| |||||||||||||| |||| ||||||| ||||||    
T  38061570 aacgagctgaaccgaactgttcgtgaattttaaacgagccgaactcgagcttaaaaaa 38061627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 7595884 - 7595766
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||| |||||||||| || ||| || ||| |||||||||| |||| | |||||||||||| || ||  ||| || ||||  |||| ||||| ||||||    
T  7595884 acctaatgagccgaaccaaattgtccgtgaactttaaacgagccgaacttgagctgaaaaaaaagctcgtgtcaaactcgaaccgaggttcgaaccgagc 7595785  T
Q  119 aaattcttatcgagtcgag 137  Q
     |||||||| |||||||||    
T  7595784 taattcttaacgagtcgag 7595766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 7955813 - 7955684
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||||||| |||||| |   ||||| ||| |||||||||| |||| ||||||| ||||||||| |||   ||||| ||||  |||||||||||||||     
T  7955813 acctaacgagtcgaaccaagtggttcgtgaactttaaacgagccgaactcgagctagaaaaaaga-ttcgtttcgaactcgaaccgagtttcgagccgaa 7955715  T
Q  118 caaattcttatcgagtcgagccgaactcaga 148  Q
    | ||||||||| |||||||| ||| ||||||    
T  7955714 ccaattcttattgagtcgagtcgagctcaga 7955684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 14770839 - 14770957
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||| |||||||   ||| |||||||||| |||| ||| |||||||||| |||||  ||| |  ||||  |||| ||||  ||||||    
T  14770839 acctaacgagccgaaccaaactgtttctgaactttaaacgagccgaactcgggctgaaaaaaaagttcgtgtcaagctcgaaccgaggttcggaccgagc 14770938  T
Q  119 aaattcttatcgagtcgag 137  Q
     |||||||| |||||||||    
T  14770939 caattcttaacgagtcgag 14770957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 28005820 - 28005770
Alignment:
Q  98 gagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcaga 148  Q
    ||||||||||||||||||| | |||||||||||||||||| ||| ||||||    
T  28005820 gagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctcaga 28005770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 7994909 - 7994757
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| |||| |||||| ||||  || |||| |||||  ||| ||| ||| ||||||| ||||   ||||| |||||||||||||||||| ||      
T  7994909 acctaacgagtcgaatcgaactattcgtaaactttatacgagctgaactcgtgctaaaaaaag-gttcgtttcgaactcgagtcgagtttcgagctgaat 7994811  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttcca 172  Q
     |||||||||||||| ||| |||||||| | | |||||  || |||||||||||    
T  7994810 caattcttatcgagttgagtcgaactcaaacaggttcgactcgactcatttcca 7994757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 23916284 - 23916177
Alignment:
Q  29 ccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttat 128  Q
    ||||||| ||||||||| | | |||||||||| |||| | |||||| ||||| |||||| ||| || ||||  |||| ||| | |||||||||||||||     
T  23916284 ccgaaccaaactgttcgtggactttaaacgagccgaacttgagctggaaaaa-agttcttgtcaaactcgaaccgagattcaaaccgagcaaattcttaa 23916186  T
Q  129 cgagtcgag 137  Q
    |||||||||    
T  23916185 cgagtcgag 23916177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 45582078 - 45582202
Alignment:
Q  22 taacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaa 121  Q
    |||||||| |||  ||||| |||| ||| |||||||||  |||| |||||||||||||| ||| |  |||||| || |  |||||||||||| || | ||    
T  45582078 taacgagctgaattgaactattcgcgaactttaaacgaaccgaactcgagctgaaaaaaaagtccgtgtcgaactcaaaccgagtttcgagctgaactaa 45582177  T
Q  122 ttcttatcgagtcgagccgaactca 146  Q
    | |||||||||||||| ||| ||||    
T  45582178 tccttatcgagtcgagtcgagctca 45582202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 15662454 - 15662327
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||| ||| |||||| ||||||||| ||| |||||||||| ||||   |||||||||||| |||||  ||| |||||||  ||||  ||||  |||||    
T  15662454 acctaatgagtcgaaccaaactgttcgtgaactttaaacgagccgaacatgagctgaaaaaaaagttcgtgtcaaattcgaaccgagactcgaatcgagc 15662355  T
Q  119 aaattcttatcgagtcgagccgaactca 146  Q
     |||||||| ||||| ||| ||| ||||    
T  15662354 caattcttaacgagttgagtcgagctca 15662327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 15305969 - 15305887
Alignment:
Q  96 tcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    ||||||||||||| ||||||||  ||||||||| |||||||| ||| |||||||   ||||  || | |||||||||||||||    
T  15305969 tcgagtcgagttttgagccgagtcaattcttattgagtcgagtcgagctcagatggattcgactcgattcatttccagcccta 15305887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 47603425 - 47603470
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcga 64  Q
    ||||||||||||||||||||| ||| | ||| ||||||||||||||    
T  47603425 acctaacgagccgaaccgaacagtttgtgaactttaaacgagtcga 47603470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 44595917 - 44595869
Alignment:
Q  90 tcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    ||||| || ||||||||||||| |||| | |||||||||||||||||||    
T  44595917 tcgaactcaagtcgagtttcgaaccgaaccaattcttatcgagtcgagc 44595869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 48152685 - 48152649
Alignment:
Q  120 aattcttatcgagtcgagccgaactcagataagttcg 156  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  48152685 aattcttatcgagtcgaaccgaactcagacaagttcg 48152649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 222919 - 223048
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  222919 acctaacgagccgaaccgaactgttcgtgaattttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagc 223018  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
    ||||| ||||||||||||||| | ||||||    
T  223019 aaatttttatcgagtcgagccaagctcaga 223048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 5776541 - 5776669
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||| |||||| |||||| ||||| |||||||||||| || |    
T  5776541 acctaacgagccgaaccgaattgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcttgtcgaactcgagccgagtttcgagctgaac 5776640  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||||||||||||||| |||||    
T  5776641 taattcttatcgagtcgagccgagctcag 5776669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 36926573 - 36926444
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||| ||||||||||| |||||||||| ||| |||| ||||| |||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  36926573 acctaacgagccgaatcgaactgttcgtgaattttaaatgagccgaactcgagatgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 36926474  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     |||||||||||||||||||||| ||||||    
T  36926473 caattcttatcgagtcgagccgagctcaga 36926444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 42071684 - 42071555
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| |||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  42071684 acctaacgagtcgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 42071585  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     ||||||||| |||||||||||| ||||||    
T  42071584 caattcttattgagtcgagccgagctcaga 42071555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 49035041 - 49035170
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||| ||||||||||| |||  ||||| |||||||| ||||||| ||||||||||||  ||| || |||||||||||||||||||||||    
T  49035041 acctaacgagccgaatcgaactgttcgtgaaccttaaaagagtcgaactcgagctaaaaaaagagttcgtgtcaaactcgagtcgagtttcgagccgagc 49035140  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
    ||| ||||||| ||||||||||| ||||||    
T  49035141 aaaatcttatcaagtcgagccgagctcaga 49035170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 3931324 - 3931463
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaag-agttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  ||| ||||||||||||||  |||||  |||||| ||||| |||||||||||||||     
T  3931324 acctaacgagccgaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaa 3931423  T
Q  118 caaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
    | |||||||||||||||||||||| |||||| | ||||||    
T  3931424 ccaattcttatcgagtcgagccgagctcagacaggttcgg 3931463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 666192 - 666330
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| | |||||||||||| ||||   |||||| ||||| ||||||||||||||| |    
T  666192 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaacttgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagccgaac 666291  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
     ||||||||||||||| |||||| |||||| | ||||||    
T  666292 caattcttatcgagtcaagccgagctcagacatgttcgg 666330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 26215881 - 26215753
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| | |||||||||||||| ||| |||||||||| |||| ||||| |||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  26215881 acctaacgagtcaaaccgaactgttcgtgaactttaaacgagccgaactcgagttgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 26215782  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||||||||||||||| |||||    
T  26215781 caattcttatcgagtcgagccgagctcag 26215753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 43052446 - 43052318
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||| |||||||||| ||| |||||| ||| |||| |||||||||||||| |||||  |||||| ||||| | ||||||||||||| |    
T  43052446 acctaacgagccgaactgaactgttcgtgaactttaaatgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaac 43052347  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||||||||||||||| |||||    
T  43052346 caattcttatcgagtcgagccgagctcag 43052318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 7539627 - 7539773
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||| ||||| |||||||||||||||  || |||||||||| |||| |||||||||||||| | ||| ||||||| ||||| |||||||||||| || |    
T  7539627 acctatcgagctgaaccgaactgttcgtaaactttaaacgagccgaactcgagctgaaaaaaaaattcgagtcgaactcgagccgagtttcgagctgaac 7539726  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactc 165  Q
     |||||||||||||||||||||| ||||||  ||||||  |||||||    
T  7539727 caattcttatcgagtcgagccgagctcagacgagttcgactcaactc 7539773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 37333862 - 37333741
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaa-aaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||| |||| |||||   ||||| ||||| |||||||||||||||     
T  37333862 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaaatagttcatatcgaactcgagccgagtttcgagccgaa 37333763  T
Q  118 caaattcttatcgagtcgagcc 139  Q
    | ||||||||||||||||||||    
T  37333762 ccaattcttatcgagtcgagcc 37333741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 7443993 - 7443864
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||| |||| |||||||||||||| |||  |||||||||  ||| |||||||||||||| ||||   |||||| ||||| |||||||||| |||| |    
T  7443993 acctaacaagccaaaccgaactgttcgtgaacattaaacgagctgaactcgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgaaccgaac 7443894  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     |||||||||||||||||||||| ||||||    
T  7443893 caattcttatcgagtcgagccgagctcaga 7443864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 45054957 - 45054801
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  || ||| ||| |||||||||| |||| ||||||  ||||||  ||||   | ||| |||||||||||||| |||||| |    
T  45054957 acctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcaagccgaac 45054858  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcc 175  Q
     |||||||||||||||||||| | |||||| |||||||  || ||||||||||||||    
T  45054857 caattcttatcgagtcgagccaagctcagacaagttcgactcgactcatttccagcc 45054801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 8110923 - 8110764
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||| ||| |||| ||||||||| | ||| ||||||||||  ||| ||||||||||||||||||||  |||||| ||||| |||||||| ||| |       
T  8110923 acctaatgagtcgaatcgaactgtttgtgaactttaaacgagctgaactcgagctgaaaaaagagttcgtgtcgaactcgagccgagtttcaagctggaa 8110824  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
     |||||||||| ||||||||| | ||||||  ||||||  ||||||||||||||||||||    
T  8110823 caattcttatcaagtcgagccaagctcagacgagttcgactcaactcatttccagcccta 8110764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 22074725 - 22074610
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| ||||||||  |||||| |||||||||||||| |||||| ||||   ||||| |||||   ||||| ||||||||||||||||||||| |    
T  22074725 acctaacgagtcgaaccgagttgttcgtgaattttaaacgagccgaatttgagccataaaaaaagttcatatcgaactcgagtcgagtttcgagccgaac 22074626  T
Q  119 aaattcttatcgagtc 134  Q
     |||||||||||||||    
T  22074625 caattcttatcgagtc 22074610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 17025973 - 17026111
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagag-ttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||||||| ||||||||  |||||| ||| |||||||||| |||| ||||| | |||||| || |||   || || |||||||||||||||||||||     
T  17025973 acctaacgagtcgaaccgagttgttcgcgaactttaaacgagccgaactcgagttaaaaaaaaagattcgtttcaaactcgagtcgagtttcgagccgaa 17026072  T
Q  118 caaattcttatcgagtcgagccgaactcagataagttcg 156  Q
    | |||||||||||||||||| ||| |||||| |||||||    
T  17026073 ccaattcttatcgagtcgagtcgagctcagacaagttcg 17026111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 388579 - 388498
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgag 100  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| |||||    
T  388579 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 388498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 8390114 - 8390273
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctga-aaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||||||||||||||||  |||||| |||  ||||||||| | || ||||||| | ||||||  || || |||||||||||| ||||||||||| |||    
T  8390114 acctaacgagccgaaccgagttgttcgtgaacattaaacgagccaaactcgagctaagaaaaaggtttgta-tcgaattcgagttgagtttcgagctgag 8390212  T
Q  118 caaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    |  ||||||||||||||||| ||| |||||| ||| |||  || |||| ||||||||||||    
T  8390213 ccgattcttatcgagtcgagtcgagctcagacaaggtcgactcgactcgtttccagcccta 8390273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 18250622 - 18250781
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||||||| |||||||||||||||| ||| |||||||||| |||| ||||| | || ||||| ||||   || || ||||||| |||||||||||||     
T  18250622 acctaacgagtcgaaccgaactgttcgtgaactttaaacgagccgaactcgagttagagaaaag-gttcgtttcaaactcgagtcaagtttcgagccgaa 18250720  T
Q  118 caaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    | |||||||||||||||||| ||| |||| | ||||| |  || |||| ||||||||||||    
T  18250721 ccaattcttatcgagtcgagtcgagctcaaacaagtttgactcgactcgtttccagcccta 18250781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 15433781 - 15433700
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgag 100  Q
    ||||||||||||||||||||||||||  ||| |||||||||| |||| |||||||||||||| |||||  |||||| |||||    
T  15433781 acctaacgagccgaaccgaactgttcatgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 15433700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 41449289 - 41449192
Alignment:
Q  41 gttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    ||||| ||| ||||||||||  ||| ||||||| ||||||||  || || ||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  41449289 gttcgtgaactttaaacgagctgaactcgagctagaaaaaaggtttgta-tcgaattcgagtcgaatttcgagccgagccaattcttatcgagtcgagc 41449192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 28950281 - 28950342
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    ||||||||||| ||||||||||||||| ||| |||||||||| |||| ||||||||||||||    
T  28950281 acctaacgagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaa 28950342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 5795493 - 5795563
Alignment:
Q  30 cgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgag 100  Q
    |||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| |||||    
T  5795493 cgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 5795563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 23236831 - 23236877
Alignment:
Q  92 gaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  23236831 gaatttgagtcgagtttcgagccgagctaattcttatcgagtcgagc 23236877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 39429586 - 39429503
Alignment:
Q  51 tttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtc 134  Q
    ||||||||||| ||| ||||| | ||||||||||||  |||||| |||| || ||||||||| ||| | |||||||||||||||    
T  39429586 tttaaacgagttgaactcgagtttaaaaaagagttcgtgtcgaactcgaatcaagtttcgagtcgaaccaattcttatcgagtc 39429503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 18740835 - 18740896
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    |||||||||||||||||||  |||||| ||| ||||||||||||||| ||||| | ||||||    
T  18740835 acctaacgagccgaaccgagttgttcgtgaactttaaacgagtcgaactcgagtttaaaaaa 18740896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 20259954 - 20260035
Alignment:
Q  67 tcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcaga 148  Q
    ||||||| ||||||||||||  |||||| ||||| |||||||  ||| || | |||||||||||||||||| ||| ||||||    
T  20259954 tcgagctaaaaaaagagttcgtgtcgaactcgagccgagttttaagctgaaccaattcttatcgagtcgagtcgagctcaga 20260035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 33899581 - 33899740
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||||||| ||||||||   ||||| ||| |||||||||| |||| ||||||| |||||||| ||||   | |||  |||  |||||||||||||||     
T  33899581 acctaacgagtcgaaccgagtggttcgtgaactttaaacgagccgaactcgagctagaaaaaag-gttcgttttgaacccgaaccgagtttcgagccgaa 33899679  T
Q  118 caaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
      |||||||||||||||||| ||| || ||| |  ||||  || |||||||||||||||||    
T  33899680 tcaattcttatcgagtcgagtcgagctgagacagattcgactcgactcatttccagcccta 33899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 35544226 - 35544300
Alignment:
Q  101 tcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcc 175  Q
    |||||||||||||||| | |||||||||||||||||  ||| |||||| | ||| |  || ||||||||||||||    
T  35544226 tcgagtttcgagccgaaccaattcttatcgagtcgaatcgagctcagacatgtttgactcgactcatttccagcc 35544300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 46574232 - 46574294
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaag 81  Q
    |||||||||||||||||||  |||||| ||| |||||||||| |||| ||||| | |||||||    
T  46574232 acctaacgagccgaaccgagttgttcgcgaactttaaacgagccgaactcgagttaaaaaaag 46574294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 33124175 - 33124138
Alignment:
Q  101 tcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  33124175 tcgagtttcgagccaagctaattcttatcgagtcgagc 33124138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 33172195 - 33172232
Alignment:
Q  101 tcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  33172195 tcgagtttcgagccgagccaattcttatcgaatcgagc 33172232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 45174778 - 45174737
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgag 60  Q
    |||||||||||||||||||| |||||| ||| ||||||||||    
T  45174778 acctaacgagccgaaccgaattgttcgtgaactttaaacgag 45174737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 305 - 438
Target Start/End: Complemental strand, 23053585 - 23053452
Alignment:
Q  305 gattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctg 404  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  23053585 gattcgactatatatgtctttttcattccgtagaaaatcaattttacggtatagacgcttatgacctctccctctatgccctgtggtaacgattcctctg 23053486  T
Q  405 gcattacggcctttaccacaatgatgatgtccat 438  Q
    ||||||| |||||||||||| ||||| |||||||    
T  23053485 gcattacagcctttaccacagtgatgctgtccat 23053452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 44741272 - 44741419
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| | |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  44741272 acctaacgagtcaaaccgaactgttcgtgaactttaaacgagtcgaatttgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagc 44741371  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactca 166  Q
    ||||||||||| ||||||||||| |||||| | |||||| ||||||||    
T  44741372 aaattcttatcaagtcgagccgagctcagacaggttcggttcaactca 44741419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 36538241 - 36538112
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| | || |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  36538241 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccaaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 36538142  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     |||||||||||||||||||||| ||||||    
T  36538141 caattcttatcgagtcgagccgagctcaga 36538112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 20986225 - 20986090
Alignment:
Q  22 taacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaa 121  Q
    ||||||||||||| |||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| || || ||||||||||||||| | ||    
T  20986225 taacgagccgaacagaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcaagccgagtttcgagccgaaccaa 20986126  T
Q  122 ttcttatcgagtcgagccgaactcagataagttcgg 157  Q
    |||||||||||||||||||| |||||| | ||||||    
T  20986125 ttcttatcgagtcgagccgagctcagacaggttcgg 20986090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 41958711 - 41958589
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  41958711 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 41958612  T
Q  119 aaattcttatcgagtcgagccga 141  Q
     |||| |||||||||||| ||||    
T  41958611 caatttttatcgagtcgaaccga 41958589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 12139527 - 12139401
Alignment:
Q  22 taacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaa 121  Q
    |||||||| ||||||||| ||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| | ||    
T  12139527 taacgagctgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaa 12139428  T
Q  122 ttcttatcgagtcgagccgaactcaga 148  Q
    ||||||||||||||| |||| ||||||    
T  12139427 ttcttatcgagtcgaaccgagctcaga 12139401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 27633306 - 27633178
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| ||||   || ||| | ||| ||||||||||||||| |    
T  27633306 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtttgtgttgaacttgagccgagtttcgagccgaac 27633207  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||| ||||||||||| |||||    
T  27633206 caattcttatcaagtcgagccgagctcag 27633178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 26435931 - 26435802
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||| |||||| ||| ||||||| ||||||| ||||| |||||||| | |||  |||||| ||||  |||||||||| |||| |    
T  26435931 acctaacgagccgaaccgaattgttcgtgaactttaaacaagtcgaactcgagttgaaaaaatatttcgtgtcgaactcgaaccgagtttcgaaccgaac 26435832  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     |||||||||||| ||||||||| ||||||    
T  26435831 caattcttatcgaatcgagccgagctcaga 26435802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 39801270 - 39801149
Alignment:
Q  34 ccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagt 133  Q
    |||||||||| | |||| |||||||||  ||| ||||||||||||||||||||  |||||| ||||| ||| |||||||| || | ||||||| ||||||    
T  39801270 ccgaactgtttgtgaatcttaaacgagctgaactcgagctgaaaaaagagttcgtgtcgaactcgagccgaatttcgagctgaactaattcttctcgagt 39801171  T
Q  134 cgagccgaactcagataagttc 155  Q
    |||||||| ||||||| |||||    
T  39801170 cgagccgagctcagatgagttc 39801149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 2647576 - 2647698
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  || ||| ||| |||||||||| |||| ||||||  ||||||  |||    | ||| ||||||||||||||||||||| |    
T  2647576 acctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaggttggttttgaactcgagtcgagtttcgagccgaac 2647675  T
Q  119 aaattcttatcgagtcgagccga 141  Q
     ||||||||||||||||||||||    
T  2647676 caattcttatcgagtcgagccga 2647698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 33164540 - 33164621
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgag 100  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| | |||||||||||| |||||  |||||| |||||    
T  33164540 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactggagctgaaaaaatagttcgtgtcgaactcgag 33164621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 33831042 - 33830961
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgag 100  Q
    |||||||||||||||||||| |||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| |||||    
T  33831042 acctaacgagccgaaccgaattgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 33830961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 40458496 - 40458399
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccga 116  Q
    |||||||||| ||||||||| || ||| |||||||||||||| |||| ||||| ||||||||  ||||   ||||| ||||||||||||| |||||||    
T  40458496 acctaacgagtcgaaccgaattgctcgtgaattttaaacgagccgaactcgagttgaaaaaaatgttcgtttcgaactcgagtcgagttttgagccga 40458399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 40675329 - 40675210
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||| |||||||||||||  |||| | ||| |||||||||| | |||| ||| | ||||||  ||||   ||||| ||||||||||||||||||||| |    
T  40675329 acctatcgagccgaaccgagttgtttgtgaactttaaacgagccaaatttgagttaaaaaaatggttcgtatcgaactcgagtcgagtttcgagccgaac 40675230  T
Q  119 aaattcttatcgagtcgagc 138  Q
     |||||||||||| ||||||    
T  40675229 caattcttatcgaatcgagc 40675210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 3409847 - 3409939
Alignment:
Q  41 gttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagt 133  Q
    ||||| ||| |||||||||| |||| ||||| | ||||||  ||||   ||||| |||||||||||||| |||||||| ||||||||||||||    
T  3409847 gttcgtgaactttaaacgagccgaactcgagttaaaaaaaaggttcgtatcgaactcgagtcgagtttcaagccgagctaattcttatcgagt 3409939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 30711615 - 30711548
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttc 86  Q
    |||||| |||||||||| ||||||||| ||| |||||||||| |||| | |||||||||||| |||||    
T  30711615 acctaatgagccgaaccaaactgttcgtgaactttaaacgagccgaacttgagctgaaaaaaaagttc 30711548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 29804399 - 29804266
Alignment:
Q  47 gaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactca 146  Q
    |||||||||||||| |||| ||||| | | ||||  ||||   ||||| | ||||||||||||||||||| | |||| |||||||||| || | | ||||    
T  29804399 gaattttaaacgagccgaactcgagttaagaaaaaggttcatttcgaacttgagtcgagtttcgagccgaaccaatttttatcgagtcaagtcaagctca 29804300  T
Q  147 gataagttcggatcaa--ctcatttccagcccta 178  Q
     ||| |||||| ||||  ||||||||||||||||    
T  29804299 aataggttcggttcaactctcatttccagcccta 29804266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 38410214 - 38410280
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagtt 85  Q
    |||||| |||||||||| ||||||||| ||| |||||||||| | || |||||||||||||| ||||    
T  38410214 acctaatgagccgaaccaaactgttcgtgaactttaaacgagcctaactcgagctgaaaaaaaagtt 38410280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 34064293 - 34064242
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcga 70  Q
    ||||||||| ||||||||||||||||| ||| |||||||||| |||| ||||    
T  34064293 acctaacgaaccgaaccgaactgttcgtgaactttaaacgagccgaactcga 34064242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 35380435 - 35380396
Alignment:
Q  102 cgagtttcgagccgagcaaattcttatcgagtcgagccga 141  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  35380435 cgagtttcgagccgatctaattcttatcgagtcgagccga 35380396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 34116729 - 34116790
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    |||||| |||||||||| ||||||||| ||| |||||||||| | || | ||||||||||||    
T  34116729 acctaatgagccgaaccaaactgttcgtgaactttaaacgagccaaacttgagctgaaaaaa 34116790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 22563422 - 22563263
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||| ||||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||  || ||| |||||||||||||||||||||||    
T  22563422 acctaacgaaccgaaccgaactgttcgtgaaccttaaacgagtcgaactcgagctgaaaaaagagttcgtgttgaactcgagtcgagtttcgagccgagc 22563323  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    ||| ||||||||||| ||||||| |||||| |  ||||  || |||||||||||||||||    
T  22563322 aaaatcttatcgagttgagccgagctcagacagattcgattcgactcatttccagcccta 22563263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 43967046 - 43966887
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  || ||| ||| |||||||||| |||| ||||||  |||||| | |||   | ||| ||||||||||||||||||||| |    
T  43967046 acctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaaattcgttttgaactcgagtcgagtttcgagccgaac 43966947  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
     ||||||||||||||||||||||  ||||| |||||||  || |||||||||||||||||    
T  43966946 caattcttatcgagtcgagccgagttcagacaagttcgactcgactcatttccagcccta 43966887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 11161230 - 11161114
Alignment:
Q  31 gaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcg 130  Q
    ||||||||||||||| ||| ||||||||||  ||| |||||||||||||| |||||  | |||| ||||| |||| |||||||||| | |||||||||||    
T  11161230 gaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtggcgaactcgagccgaggttcgagccgaaccaattcttatcg 11161131  T
Q  131 agtcgagccgaactcag 147  Q
    ||| ||||||| |||||    
T  11161130 agtggagccgagctcag 11161114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 22930858 - 22930943
Alignment:
Q  51 tttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgag 137  Q
    ||||||||||| ||| |||||||||||||| ||||   |||||| ||||| ||||||||||||||| | ||||||||||||||||||    
T  22930858 tttaaacgagt-gaactcgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgag 22930943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 23180913 - 23180795
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||| |||||||||| |||||||||  || ||||||||||||||| | ||| |||||||| |||||  ||| || ||||  |||| ||||| |||| |    
T  23180913 acctaatgagccgaaccaaactgttcgtaaactttaaacgagtcgaacttgagatgaaaaaaaagttcctgtcaaactcgaaccgaggttcgaaccgaac 23180814  T
Q  119 aaattcttatcgagtcgag 137  Q
    ||||||||| |||||||||    
T  23180813 aaattcttaacgagtcgag 23180795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 9413262 - 9413376
Alignment:
Q  41 gttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccg 140  Q
    ||||| ||| |||||| ||| |||| | ||||| ||||||  ||||  |||||| || |||||||||||||||||| | | |||||||||||||||| ||    
T  9413262 gttcgtgaactttaaatgagccgaacttgagctaaaaaaaaggttcgtgtcgaactcaagtcgagtttcgagccgaaccatttcttatcgagtcgagtcg 9413361  T
Q  141 aactcagataagttc 155  Q
    | |||||| ||||||    
T  9413362 agctcagacaagttc 9413376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 17865719 - 17865777
Alignment:
Q  88 agtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactca 146  Q
    ||||||| |||||||||||||||||| || | |||||||||||||| |||||| |||||    
T  17865719 agtcgaactcgagtcgagtttcgagctgaaccaattcttatcgagttgagccggactca 17865777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 39477511 - 39477423
Alignment:
Q  90 tcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    ||||||||||| | ||||||||  ||| | |||||||||||||||||| ||| |||||| |  ||||  || |||||||||||||||||    
T  39477511 tcgaattcgagccaagtttcgaatcgaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactcatttccagcccta 39477423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 12377853 - 12377767
Alignment:
Q  51 tttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgag 137  Q
    ||||||||||  ||| ||||| | |||||| |||||   ||||| |||||||||||||||||| || || ||||||||||| |||||    
T  12377853 tttaaacgagatgaactcgagttaaaaaaatagttcgtttcgaactcgagtcgagtttcgagctgaacacattcttatcgaatcgag 12377767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 33280616 - 33280678
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaag 81  Q
    |||||| |||||||||| || |||||| ||| |||||| |||||||| | |||||||||||||    
T  33280616 acctaatgagccgaaccaaattgttcgtgaactttaaatgagtcgaacttgagctgaaaaaag 33280678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 1091236 - 1091164
Alignment:
Q  26 gagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcga 99  Q
    ||||||||| |||||||||| ||| ||||||||||||||| || | || ||||||||||||  |||||| ||||    
T  1091236 gagccgaactgaactgttcgtgaactttaaacgagtcgaactcaaact-aaaaaagagttcgtgtcgaactcga 1091164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 9133525 - 9133437
Alignment:
Q  51 tttaaacgagtcgaattcgagctgaaaaaagag-ttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    ||||||||||||||| ||||| | |||||| || ||| | || |||||||||||||||| || | || | | |||||||||||||||||    
T  9133525 tttaaacgagtcgaactcgagtttaaaaaaaaggttcgattcaaattcgagtcgagttttgaactgaaccatttcttatcgagtcgagc 9133437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 25731909 - 25731949
Alignment:
Q  98 gagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    ||||||| ||||||||||| | |||||||||||||||||||    
T  25731909 gagtcgactttcgagccgaaccaattcttatcgagtcgagc 25731949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 32740370 - 32740306
Alignment:
Q  92 gaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcg 156  Q
    |||||||||| || |||||||| || | ||||||||| |||||||  ||||||||||||| ||||    
T  32740370 gaattcgagttgaatttcgagctgaactaattcttattgagtcgaatcgaactcagataaattcg 32740306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 27905644 - 27905506
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||| |||||  |||||| ||||| ||||||||| ||||| |    
T  27905644 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaattcgggctgaaaaaatagttcgtgtcgaactcgagccgagtttcgtgccgaac 27905545  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
     |||||||||| ||||||||||| |||||||||||||||    
T  27905544 caattcttatcaagtcgagccgagctcagataagttcgg 27905506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 18879784 - 18879655
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||| ||| |||| |||||||||||||| |||||  |||||| ||||| | ||||||||||||| |    
T  18879784 acctaacgagccgaaccgaactgttcgtgaactttaaatgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaac 18879685  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     |||||||||||||||||||||||||||||    
T  18879684 caattcttatcgagtcgagccgaactcaga 18879655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 1224728 - 1224606
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||| |||||| ||| |||||||||  |||||| ||||||||||||||||| |||||    
T  1224728 acctaacgagccgaaccgaactgttcgtgaaccttaaacgagtcgaactcgagcggaataaagagttcgtgtcgaactcgagtcgagtttcgagtcgagc 1224629  T
Q  119 aaattcttatcgagtcgagccga 141  Q
    ||| |||||| ||||||||||||    
T  1224628 aaaatcttattgagtcgagccga 1224606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 32157363 - 32157483
Alignment:
Q  21 ctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaa 120  Q
    ||||||||||||||||||||| ||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||| | ||||||||||||| | |    
T  32157363 ctaacgagccgaaccgaactggtcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaacca 32157462  T
Q  121 attcttatcgagtcgagccga 141  Q
    |||||||||||||||||||||    
T  32157463 attcttatcgagtcgagccga 32157483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 39408879 - 39408766
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    ||||||| ||||||||||||||| ||| |||||||||| |||| ||||||| |||||| |||||   ||||| ||||||||||||||||||||| | |||    
T  39408879 aacgagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagcttaaaaaaaagttcgcttcgaactcgagtcgagtttcgagccgaaccaat 39408780  T
Q  123 tcttatcgagtcga 136  Q
    ||||||||||||||    
T  39408779 tcttatcgagtcga 39408766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 5385067 - 5385202
Alignment:
Q  21 ctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaa 120  Q
    |||| ||||||||||||| |||||| ||| ||||||||||||||| ||||||| ||||||||||||  || ||| ||||||| ||||||||||||| |||    
T  5385067 ctaatgagccgaaccgaattgttcgtgaactttaaacgagtcgaactcgagctaaaaaaagagttcgtgttgaactcgagtcaagtttcgagccgaacaa 5385166  T
Q  121 attcttatcgagtcgagccgaactcagataagttcg 156  Q
    ||| | ||||| ||||  ||| |||||| |||||||    
T  5385167 attttaatcgaatcgaatcgagctcagaaaagttcg 5385202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 39407141 - 39407028
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    ||||||| ||||||||||||||| ||| |||||||||| |||| ||||||| |||||| |||||   ||||| |||||||||||||||| |||| | |||    
T  39407141 aacgagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagcttaaaaaaaagttcacttcgaactcgagtcgagtttcgaaccgaaccaat 39407042  T
Q  123 tcttatcgagtcga 136  Q
    ||||||||||||||    
T  39407041 tcttatcgagtcga 39407028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 26299606 - 26299475
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    ||||||| ||||||||||||||| ||| |||||||||| |||| ||||| | ||||||  ||||   ||||| ||||||||||||||||||||| | |||    
T  26299606 aacgagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagtttaaaaaaaggttcacttcgaactcgagtcgagtttcgagccgaaccaat 26299507  T
Q  123 tcttatcgagtcgagccgaactcagataagtt 154  Q
    ||||||||||||||  ||| |||||| |||||    
T  26299506 tcttatcgagtcgaatcgagctcagacaagtt 26299475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 34720043 - 34720156
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    ||||||| ||||||||||||||| ||| ||||||||||  ||| ||||||| |||||| |||||   ||||| |||||||||||||||| |||| | |||    
T  34720043 aacgagctgaaccgaactgttcgtgaactttaaacgagctgaactcgagcttaaaaaaaagttcgcttcgaactcgagtcgagtttcgaaccgaaccaat 34720142  T
Q  123 tcttatcgagtcga 136  Q
    ||||||||||||||    
T  34720143 tcttatcgagtcga 34720156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 19715921 - 19715778
Alignment:
Q  34 ccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagt 133  Q
    ||||||| |||| ||| |||||||||| |||| ||||| | ||||||| ||||   ||||| ||||||||||||||||||||| | |||| |||||||||    
T  19715921 ccgaactattcgtgaactttaaacgagccgaactcgagtttaaaaaag-gttcgcttcgaactcgagtcgagtttcgagccgaaccaattattatcgagt 19715823  T
Q  134 cgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    |||  ||| |||||| |||||||  || |||||||||||||||||    
T  19715822 cgaatcgagctcagacaagttcgactctactcatttccagcccta 19715778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 4983941 - 4984100
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  || ||| ||| |||||||||| |||| ||||||  ||||||  ||||   | ||| |||||||||||||| ||| || |    
T  4983941 acctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcaagctgaac 4984040  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
     |||||||||||||||||||||| |||||| ||||||   || ||| |||||||||||||    
T  4984041 caattcttatcgagtcgagccgagctcagacaagttcaactcgacttatttccagcccta 4984100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 3805397 - 3805487
Alignment:
Q  67 tcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
    |||||||||||||| |||||  |||||| ||||| ||||||||||||||| | |||||||||||||||||||||| |||||| | ||||||    
T  3805397 tcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaggttcgg 3805487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 15932101 - 15931975
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||| ||||||||||||||||||||| ||| |||||||||  |||| |||||  |||||||||||||  || ||| ||||  |||||||| ||| || |    
T  15932101 acctatcgagccgaaccgaactgttcgtgaactttaaacgaaccgaactcgagtcgaaaaaagagttcgtgttgaactcgaaccgagtttcaagctgaac 15932002  T
Q  119 aaattcttatcgagtcgagccgaactc 145  Q
     |||||||||||||||||| |||||||    
T  15932001 caattcttatcgagtcgagtcgaactc 15931975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 22921595 - 22921509
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgag 105  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| ||||| |||||||| |||||  |||||||||||| ||||    
T  22921595 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagatgaaaaaatagttcgtgtcgaattcgagccgag 22921509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 43385963 - 43385833
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaaga-gttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    ||||| |||||||||| ||||| |||| ||| |||||||||| |||| || ||||||||||| | |||   |||||| ||||| |||||||||||| ||     
T  43385963 acctatcgagccgaactgaactattcgtgaactttaaacgagccgaactcaagctgaaaaaaaaagtttgtgtcgaactcgagccgagtttcgagctgaa 43385864  T
Q  118 caaattcttatcgagtcgagccgaactcaga 148  Q
    | |||||||||||||||||||||| ||||||    
T  43385863 ccaattcttatcgagtcgagccgagctcaga 43385833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 1840958 - 1841082
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    |||||||||||| ||  |||||| ||| |||||||||| |||| ||||| | ||||||| ||||   ||||| ||||||||||||||||||||| | |||    
T  1840958 aacgagccgaac-gagttgttcgtgaactttaaacgagccgaactcgagttaaaaaaagggttcgtatcgaactcgagtcgagtttcgagccgaaccaat 1841056  T
Q  123 tcttatcgagtcgagccgaactcaga 148  Q
    ||||||||||||||| ||| ||||||    
T  1841057 tcttatcgagtcgagtcgagctcaga 1841082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 27450970 - 27451083
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    ||||||| ||||||||||||||| ||| |||||||||| |||| ||||| | ||||||  ||||   ||||| |||||| |||||||||||||| | |||    
T  27450970 aacgagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagtttaaaaaaatgttcgcttcgaactcgagttgagtttcgagccgaaccaat 27451069  T
Q  123 tcttatcgagtcga 136  Q
    ||||||||||||||    
T  27451070 tcttatcgagtcga 27451083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 26298065 - 26297952
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    ||||||| |||||||||| |||| ||| |||||||||| |||| ||||| | ||||||  ||||   ||||| |||| |||||||||||||||| | |||    
T  26298065 aacgagctgaaccgaactattcgtgaactttaaacgagccgaactcgagtttaaaaaaaggttcgcttcgaactcgaatcgagtttcgagccgaaccaat 26297966  T
Q  123 tcttatcgagtcga 136  Q
    ||||||||||||||    
T  26297965 tcttatcgagtcga 26297952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 29322215 - 29322134
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgag 100  Q
    ||||||||||||||||||||| ||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| |||||    
T  29322215 acctaacgagccgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 29322134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 38523233 - 38523313
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcga 99  Q
    ||||||||||||||||| ||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||    
T  38523233 acctaacgagccgaaccaaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcga 38523313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 34724019 - 34724132
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    ||||||| ||||||||||||||| ||| | ||||||||  ||| ||||||| ||||||  ||||   ||||| |||||||||||||||| | || | |||    
T  34724019 aacgagctgaaccgaactgttcgtgaactctaaacgagctgaactcgagcttaaaaaaaggttcgcttcgaactcgagtcgagtttcgaactgaaccaat 34724118  T
Q  123 tcttatcgagtcga 136  Q
    ||||||||||||||    
T  34724119 tcttatcgagtcga 34724132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 27195587 - 27195428
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||||||  | |||||| ||||||| ||| |||||||||| |||| ||||| | || ||||| ||||   || || |||||| ||||||||||||||     
T  27195587 acctaacgaatcaaaccgagctgttcgtgaactttaaacgagccgaactcgagttagagaaaag-gttcgtttcaaactcgagtagagtttcgagccgaa 27195489  T
Q  118 caaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagcccta 178  Q
    | ||||||||| |||||||| ||| |||||| | |||||  || |||||||||||||||||    
T  27195488 ccaattcttattgagtcgagtcgagctcagacatgttcgactcgactcatttccagcccta 27195428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 19283563 - 19283697
Alignment:
Q  21 ctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaa 120  Q
    |||| ||| ||||||||  |||||| ||| ||||||  ||| ||| ||||| | ||||||| ||||   ||||| ||||||||||||||||||  | | |    
T  19283563 ctaatgagtcgaaccgagttgttcgtgaactttaaatcagtagaactcgagttaaaaaaag-gttcgtatcgaactcgagtcgagtttcgagctaaacca 19283661  T
Q  121 attcttatcgagtcgagccgaactcagataagttcg 156  Q
    ||||||||||||||||| ||| ||||||||||||||    
T  19283662 attcttatcgagtcgagtcgagctcagataagttcg 19283697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 41782858 - 41782748
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  || ||| ||| |||||||||| |||| ||||||  ||||||  ||||   | ||| ||||||||||||||||||||| |    
T  41782858 acctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaac 41782759  T
Q  119 aaattcttatc 129  Q
     ||||||||||    
T  41782758 caattcttatc 41782748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 11136639 - 11136776
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||||||||||||  || ||| ||| |||||||||  |||  ||||||  ||||||  ||||   | ||| ||||||||||||||||||||| |    
T  11136639 acctaacgagccgaaccgagttgctcgtgaactttaaacgaaccgagctcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaac 11136738  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcg 156  Q
      ||||||||||| |||||||||  ||||| |||||||    
T  11136739 ctattcttatcgaatcgagccgagttcagacaagttcg 11136776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 26217587 - 26217450
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||| |||||||||  |  ||| ||| |||||||||| |||| | ||||  ||||||  ||||   | ||| ||||||||||||||||||||| |    
T  26217587 acctaacgaaccgaaccgagtttctcgtgaactttaaacgagccgaactggagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaac 26217488  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcg 156  Q
     ||||||||| ||||||| |||| |||||| |||||||    
T  26217487 caattcttattgagtcgaaccgagctcagacaagttcg 26217450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 14501399 - 14501451
Alignment:
Q  96 tcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcaga 148  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||| ||||||    
T  14501399 tcgagtcgagtttcgagccgaaccgattcttatcgagtcgagccgagctcaga 14501451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 34857102 - 34856981
Alignment:
Q  23 aacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaat 122  Q
    ||||||| ||||||||||||||| |||     |||||| |||| |||| || ||||||  ||||   ||||| ||||||| ||||||||||||| | |||    
T  34857102 aacgagctgaaccgaactgttcgtgaac----aacgagccgaactcgaacttaaaaaaatgttcgcttcgaactcgagtcaagtttcgagccgaaccaat 34857007  T
Q  123 tcttatcgagtcgagccgaactcaga 148  Q
    ||||||||||||||  ||||||||||    
T  34857006 tcttatcgagtcgaatcgaactcaga 34856981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 10493506 - 10493419
Alignment:
Q  51 tttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    |||||||||| |||| | ||| ||||||||  ||||   ||||| ||||||||||||||||||||| | | |||||||||||||||||    
T  10493506 tttaaacgagccgaacttgagttgaaaaaaaggttcgtttcgaactcgagtcgagtttcgagccgaaccatttcttatcgagtcgagc 10493419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2675464 - 2675404
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    |||||| ||||||| || ||||||||| ||| ||||||||||||||| ||||||||||||||    
T  2675464 acctaatgagccga-ccaaactgttcgtgaactttaaacgagtcgaactcgagctgaaaaaa 2675404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 31620126 - 31620065
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    |||||||||||||||||||| |||||| |||  |||||||||||||| | ||| ||||||||    
T  31620126 acctaacgagccgaaccgaattgttcgtgaaccttaaacgagtcgaacttgagttgaaaaaa 31620065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 20191210 - 20191271
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaa 80  Q
    |||||| |||||||||| ||||||| | ||| |||||||||| |||| | ||||||||||||    
T  20191210 acctaatgagccgaaccaaactgtttgtgaactttaaacgagccgaacttgagctgaaaaaa 20191271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 28430642 - 28430594
Alignment:
Q  90 tcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagc 138  Q
    ||||| ||||||||||||| |||| || | |||||||||||||||||||    
T  28430642 tcgaactcgagtcgagttttgagctgaactaattcttatcgagtcgagc 28430594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 10346376 - 10346249
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |    
T  10346376 acctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaac 10346277  T
Q  119 aaattcttatcgagtcgagccgaactca 146  Q
     |||||||||||| ||||||||| ||||    
T  10346276 caattcttatcgaatcgagccgagctca 10346249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 7957218 - 7957080
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  ||| |||||||||||||| |||||  || ||| ||||| ||||||||||||||| |    
T  7957218 acctaacgagccgaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtgttgaactcgagccgagtttcgagccgaac 7957119  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
     |||||||||||||||||||||| |||||| | ||||||    
T  7957118 caattcttatcgagtcgagccgagctcagacaggttcgg 7957080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 18962009 - 18961881
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||| ||||   |||||| ||||| ||||||||||||||| |    
T  18962009 acctagcgagccgaaccgaactgttcgtgaactttaaacgagtcgaactcgggctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagccgaac 18961910  T
Q  119 aaattcttatcgagtcgagccgaactcag 147  Q
     |||||||||||||||||||||| |||||    
T  18961909 caattcttatcgagtcgagccgagctcag 18961881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 25181143 - 25181260
Alignment:
Q  21 ctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaa 120  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||| ||||||| ||||||||||||  |||||| || ||  ||||||||||| ||||||    
T  25181143 ctaacgagccgaatcgaactgtttgtgaattttaaacgagtcgaactcgagcttaaaaaagagttcgtgtcgaactcaagctgagtttcgagctgagcaa 25181242  T
Q  121 attcttatcgagtcgagc 138  Q
    ||||||| ||||||||||    
T  25181243 attcttaacgagtcgagc 25181260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 472987 - 472863
Alignment:
Q  22 taacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaa 121  Q
    |||||||| ||| | ||||||||| ||| ||||||||||||||| ||||||||||||||||||||  |||||| | |||||||||||| | | |||||||    
T  472987 taacgagctgaatcaaactgttcgtgaactttaaacgagtcgaactcgagctgaaaaaagagttcgtgtcgaacttgagtcgagtttcaaactgagcaaa 472888  T
Q  122 ttcttatcgagtcgagccgaactca 146  Q
    |||||||| ||||||| ||| ||||    
T  472887 ttcttatcaagtcgagtcgagctca 472863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 6998671 - 6998602
Alignment:
Q  88 agtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcgg 157  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||    
T  6998671 agtcgaactcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgagctcagacaggttcgg 6998602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 12428191 - 12428088
Alignment:
Q  35 cgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtc 134  Q
    |||||||||||  || ||||||||||||||| ||||||| || ||| |||||   ||||| |||||||||||||||||||||   |||||||||||||||    
T  12428191 cgaactgttcgtaaactttaaacgagtcgaactcgagcttaacaaaaagttcgtatcgaactcgagtcgagtttcgagccgaatcaattcttatcgagtc 12428092  T
Q  135 gagc 138  Q
    ||||    
T  12428091 gagc 12428088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 33109964 - 33109859
Alignment:
Q  51 tttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagata 150  Q
    |||||||||| |||| ||||||  ||||||  ||||   | ||| ||||||||||||||||||||| | |||||||||||||||||||||| |||||| |    
T  33109964 tttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccgagctcagaca 33109865  T
Q  151 agttcg 156  Q
    ||||||    
T  33109864 agttcg 33109859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 22295518 - 22295383
Alignment:
Q  21 ctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaa 120  Q
    ||||||||| |||||||  || ||| |||||||||| ||| |||| |||||| | ||||| ||||    ||||| ||||||||||||||||||||| | |    
T  22295518 ctaacgagctgaaccgagttgctcgtgaattttaaatgagccgaactcgagccggaaaaaaagtttgtttcgaactcgagtcgagtttcgagccgaacca 22295419  T
Q  121 attcttatcgagtcgagccgaactcagataagttcg 156  Q
    ||||| ||||||| ||||||| || ||| |||||||    
T  22295418 attctaatcgagttgagccgagctaagacaagttcg 22295383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 6998711 - 6998659
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgag 71  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||    
T  6998711 acctaacgagccgaaccgaactgttcgtgaactttaaacgagtcgaactcgag 6998659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 7436863 - 7436735
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    ||||||||||| ||||| |  || ||| ||| |||||||||| |||| ||||| ||||||||| ||||   || || |||||| |||||||||||||| |    
T  7436863 acctaacgagctgaaccaagttgctcgtgaactttaaacgagccgaactcgagttgaaaaaag-gttcgtttcaaactcgagtggagtttcgagccgaac 7436765  T
Q  119 aaattcttatcgagtcgagccgaactcaga 148  Q
     | |||||||||||||||| ||| ||||||    
T  7436764 catttcttatcgagtcgagtcgagctcaga 7436735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 27925554 - 27925486
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttct 87  Q
    |||||| |||||||||| ||||||||| |||||||||||||| |||| | ||| |||||||| ||||||    
T  27925554 acctaatgagccgaaccaaactgttcgtgaattttaaacgagccgaacttgagatgaaaaaaaagttct 27925486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 26345889 - 26345819
Alignment:
Q  271 gtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaa 341  Q
    ||||||||| |||||||| || |||  |||||||||||| | ||||||||||||||| ||| |||||||||    
T  26345889 gtgcatttcgattagggttgttttcactagttacgattcaatcatatatgtcttttttattccgtcgaaaa 26345819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 17439624 - 17439555
Alignment:
Q  96 tcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcggatcaactc 165  Q
    ||||| ||||||||||||||||  |||| ||||||||||||||||| || || ||||||||  |||||||    
T  17439624 tcgagccgagtttcgagccgagttaatttttatcgagtcgagccgagcttagctaagttcgactcaactc 17439555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 33064673 - 33064637
Alignment:
Q  179 tgtaacataaacaatggtatctccaattatagcccct 215  Q
    |||| ||||||||||||||||||||||||||||||||    
T  33064673 tgtaccataaacaatggtatctccaattatagcccct 33064637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 3082307 - 3082454
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||||||| ||||| ||  || ||| ||| || |||||||||||| ||||| ||||||||  ||||   ||||| || |||||||||||||||| | |    
T  3082307 acctaacgagtcgaactgagttgctcgtgaacttaaaacgagtcgaactcgagttgaaaaaaaggttcgtttcgaactctagtcgagtttcgagcccaac 3082406  T
Q  119 aaattcttatcgagtcgagccgaactcagataagttcggatcaactca 166  Q
     | ||||||| || ||||| | | |||||||| |||||| || |||||    
T  3082407 catttcttattgaatcgagtcaagctcagataggttcggttcgactca 3082454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 10962398 - 10962465
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttc 86  Q
    |||||| |||||||||| ||||||||| ||| |||||||||| |||| |  ||||||||||| |||||    
T  10962398 acctaatgagccgaaccaaactgttcgtgaactttaaacgagccgaacttaagctgaaaaaaaagttc 10962465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 13311512 - 13311383
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    |||||||||| |||| |||   ||||| ||| |||||||||| |||| ||||||| |||||||| ||||   ||||| ||||  ||||||| ||| |||     
T  13311512 acctaacgagtcgaatcgagtggttcgtgaactttaaacgagccgaactcgagctagaaaaaag-gttcgtttcgaactcgaaccgagttttgagtcgaa 13311414  T
Q  118 caaattcttatcgagtcgagccgaactcaga 148  Q
    | |||||||||||||||||| ||| ||||||    
T  13311413 ccaattcttatcgagtcgagtcgagctcaga 13311383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 11460816 - 11460893
Alignment:
Q  99 agtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcagataagttcggatcaactcatttccagccc 176  Q
    |||| ||||||||||| | | |||||||||||| ||||| |||  ||| | |||||||  ||||||||||||||||||    
T  11460816 agtcaagtttcgagccaaaccaattcttatcgaatcgagtcgagttcaaacaagttcgactcaactcatttccagccc 11460893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 18874 - 18747
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagc 118  Q
    |||||| |||||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||  |||||| ||||  ||||||| ||||||| |    
T  18874 acctaatgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgaaccgagttttgagccgaac 18775  T
Q  119 aaattcttatcgagtcgagccgaactca 146  Q
     |||||||||||||||||||||| ||||    
T  18774 caattcttatcgagtcgagccgagctca 18747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 1389 - 1508
Alignment:
Q  19 acctaacgagccgaaccgaactgttcgagaattttaaacgagtcgaattcgagct-gaaaaaagagttctagtcgaattcgagtcgagtttcgagccgag 117  Q
    ||||||||||||||||| |  |||||| ||| |||||||||| |||| || || | || ||||| ||||   || || |||||||||||||||||||||     
T  1389 acctaacgagccgaaccaagttgttcgtgaactttaaacgagccgaactcaagttagagaaaag-gttcgtttcaaactcgagtcgagtttcgagccgaa 1487  T
Q  118 caaattcttatcgagtcgagc 138  Q
    | |||||||||||||||||||    
T  1488 ccaattcttatcgagtcgagc 1508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 6418 - 6497
Alignment:
Q  68 cgagctgaaaaaagagttctagtcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactcag 147  Q
    ||||||||||||| |||||  |||||| ||||| |||||||| | |||| | |||||||||||||||||| ||| |||||    
T  6418 cgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcaacccgaaccaattcttatcgagtcgagtcgagctcag 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 26586 - 26530
Alignment:
Q  90 tcgaattcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgaactca 146  Q
    ||||| ||||||||| |||||||| || | |||||||||||||||||| ||| ||||    
T  26586 tcgaactcgagtcgaatttcgagctgaaccaattcttatcgagtcgagtcgagctca 26530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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