View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10247_low_1 (Length: 616)
Name: NF10247_low_1
Description: NF10247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10247_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 44450210 - 44450810
Alignment:
| Q |
1 |
aatgtaagttctttattctttgacattcacaatttattttgctatataagctattcaaatgccattgttctattactcaatttctttaagcctattgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44450210 |
aatgtaagttctttattctttgacattcacaatttattttgctatataagctattcaaatgccattgttctattactcaatttctttaagcctattgaaa |
44450309 |
T |
|
| Q |
101 |
aattcctgtcatcaatgatttcacgtgcattgtttttgtcctacttcggacggaaatgatgtgttttaggctttagcaaacatgttgatgtcatactgtt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44450310 |
aattcctgtcatcaatgatttcacgtgcattatttttgtcctacttcggacggaaatgatgtgttttaggctttagcaaacatgttgatgtcatactgtt |
44450409 |
T |
|
| Q |
201 |
tgtgctttgtagtgtagagagtacacactcaggtgccggaagtacatct-tacactatagattatattatatgagtacatattcggggccgtcaataata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44450410 |
tgtgctttgtagtgtagagagtacacactcaggtgccggaagtacatctatacactatagattatattatatgagtacatattcggggccgtcaataata |
44450509 |
T |
|
| Q |
300 |
ctaacatagcatgccaattctcaactctcctcccctgaccttgcacccctcttgctagctaatgtaatgggcacagcccttcttaggacctagccttgtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44450510 |
ctaacatagcatgccaattctcaactctcctcccctgaccttgcacccctcttgctagctaatgtaatgggcacagcccttcttaggacctagccttgtt |
44450609 |
T |
|
| Q |
400 |
tgttgcttccccctcgtaccgaaatgaaaacatggtaattgtttaggaatttggcgcactgacatacttgaaatttgattagtaatatactcaaatgcat |
499 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44450610 |
tgttgcttccccctcgtaccaaaatgaaaacatggtaattgtttaggaatttggcgcattgacatacttgaaatttgattagtaatatactcaaatgcat |
44450709 |
T |
|
| Q |
500 |
ttactttaagaaaatacattggtttaaagaactgtgaatttgactttgtttaaaataatgaataatctccaggtaaaaagaacagacttaacattcatta |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44450710 |
ttactttaagaaaatacattggtttaaagaactgtgaatttgactttgtttaaaataatgaataatctccaggtaaaaagaacagacttaacattcatta |
44450809 |
T |
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| Q |
600 |
t |
600 |
Q |
| |
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| T |
44450810 |
t |
44450810 |
T |
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