View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10247_low_4 (Length: 318)
Name: NF10247_low_4
Description: NF10247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10247_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 73 - 304
Target Start/End: Original strand, 28403707 - 28403938
Alignment:
| Q |
73 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc |
172 |
Q |
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| T |
28403707 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc |
28403806 |
T |
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| Q |
173 |
agactcaaaaagtgaaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt |
272 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403807 |
agactcaaaaagtgcaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt |
28403906 |
T |
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| Q |
273 |
tttaatgctttttcagaatgggcagaagtaag |
304 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28403907 |
tttaatgctttttcagaatgggcagaagtaag |
28403938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 73 - 304
Target Start/End: Complemental strand, 28586089 - 28585858
Alignment:
| Q |
73 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc |
172 |
Q |
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| T |
28586089 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc |
28585990 |
T |
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| Q |
173 |
agactcaaaaagtgaaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt |
272 |
Q |
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| T |
28585989 |
agactcaaaaagtgcaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt |
28585890 |
T |
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| Q |
273 |
tttaatgctttttcagaatgggcagaagtaag |
304 |
Q |
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| T |
28585889 |
tttaatgctttttcagaatgggcagaagtaag |
28585858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 28417400 - 28417494
Alignment:
| Q |
209 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagtaa |
303 |
Q |
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| T |
28417400 |
gaggaagcctcggattgtacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaa |
28417494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 302
Target Start/End: Original strand, 28419851 - 28419944
Alignment:
| Q |
209 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta |
302 |
Q |
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| T |
28419851 |
gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta |
28419944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 28582339 - 28582246
Alignment:
| Q |
209 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta |
302 |
Q |
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| T |
28582339 |
gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta |
28582246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 8047415 - 8047370
Alignment:
| Q |
104 |
gagctacgtatgatataagaactaggattaaagacat-tgttaaaa |
148 |
Q |
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| T |
8047415 |
gagctacatatgatataagaactaggattaaagacatatgttaaaa |
8047370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 28403628 - 28403685
Alignment:
| Q |
19 |
tgtgtatattaaagaacttgtgacagttgattttgacatatgttgcattgtattcatg |
76 |
Q |
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| T |
28403628 |
tgtgtatattaaagaacttgtgatggttggttttgtcatatgttgtattgcattcatg |
28403685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 28586168 - 28586111
Alignment:
| Q |
19 |
tgtgtatattaaagaacttgtgacagttgattttgacatatgttgcattgtattcatg |
76 |
Q |
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| T |
28586168 |
tgtgtatattaaagaacttgtgatggttggttttgtcatatgttgtattgcattcatg |
28586111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 28417270 - 28417363
Alignment:
| Q |
104 |
gagctacgtatgatataagaactaggattaaagacattgttaaaa---tatcttggtgatgatggctaactcagactcaaaaagtgaaattgga |
194 |
Q |
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| T |
28417270 |
gagctgcgtgtgatataagaatcaagattgaaggcattgttaaaaaaatatattggcgatgatggctaactcagactctacaagtgcaattgga |
28417363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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