View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10248_low_3 (Length: 241)
Name: NF10248_low_3
Description: NF10248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10248_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39622470 - 39622696
Alignment:
| Q |
1 |
tggcatatcaactgagtatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctctcttcccataatgtttattttccgttaca |
100 |
Q |
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| T |
39622470 |
tggcatatcaactgaatatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctctcttcccataatgtttattttccgttaca |
39622569 |
T |
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| Q |
101 |
gattttttcttcctggatagcaattgaacggattcaacgacctgatgttctttaagtgctgcataatccatttctaatattagtacatactaagctttta |
200 |
Q |
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| T |
39622570 |
gattttttcttcctggatagcaattgaacggattcaacgacctgatgttctttaagtgctgcataatccatttctaatattagtacatactaagctttta |
39622669 |
T |
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| Q |
201 |
tttattttgctaaggttggtgaaactt |
227 |
Q |
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| T |
39622670 |
tttattttgctaaggttggtgaaactt |
39622696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 39589718 - 39589773
Alignment:
| Q |
17 |
tatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctct |
72 |
Q |
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| T |
39589718 |
tatgttacttcatcaaaggtgacacaatgtggttcaaaaggaagaaccattcctct |
39589773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 39575481 - 39575535
Alignment:
| Q |
17 |
tatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctc |
71 |
Q |
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| T |
39575481 |
tatgttacttcatcaaaggttatagaatgttgttcaaaaggaagaaccattcctc |
39575535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 39338011 - 39337959
Alignment:
| Q |
17 |
tatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcc |
69 |
Q |
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| T |
39338011 |
tatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc |
39337959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 39349188 - 39349136
Alignment:
| Q |
17 |
tatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcc |
69 |
Q |
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| T |
39349188 |
tatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc |
39349136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 39547973 - 39548033
Alignment:
| Q |
17 |
tatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctctcttcc |
77 |
Q |
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| T |
39547973 |
tatgtaacttcatcaaaggtgattgaatgtggttcaaaagggagaaccattcctcttttcc |
39548033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 39564827 - 39564879
Alignment:
| Q |
17 |
tatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcc |
69 |
Q |
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| T |
39564827 |
tatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc |
39564879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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