View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10249_low_1 (Length: 431)

Name: NF10249_low_1
Description: NF10249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10249_low_1
NF10249_low_1
[»] chr8 (3 HSPs)
chr8 (22-416)||(9692345-9692740)
chr8 (23-416)||(9675323-9675717)
chr8 (123-290)||(21463943-21464111)
[»] chr4 (3 HSPs)
chr4 (20-413)||(35162539-35162933)
chr4 (11-413)||(35155509-35155913)
chr4 (125-296)||(15556218-15556390)
[»] chr3 (27 HSPs)
chr3 (105-304)||(47397047-47397247)
chr3 (27-296)||(46236538-46236814)
chr3 (88-296)||(16025653-16025862)
chr3 (91-309)||(5160446-5160668)
chr3 (91-296)||(46526169-46526378)
chr3 (91-296)||(5156417-5156626)
chr3 (91-296)||(45883483-45883686)
chr3 (123-299)||(46479994-46480171)
chr3 (85-297)||(46539163-46539376)
chr3 (128-298)||(46544681-46544852)
chr3 (107-301)||(46498136-46498331)
chr3 (27-297)||(46484156-46484419)
chr3 (20-298)||(47413941-47414217)
chr3 (339-417)||(46236404-46236482)
chr3 (107-202)||(46554026-46554121)
chr3 (107-296)||(46548750-46548940)
chr3 (234-299)||(4581132-4581197)
chr3 (234-299)||(4613589-4613654)
chr3 (105-213)||(51944076-51944185)
chr3 (338-406)||(47413821-47413889)
chr3 (27-296)||(46474037-46474301)
chr3 (244-301)||(46491029-46491086)
chr3 (235-296)||(46532224-46532285)
chr3 (109-181)||(45903145-45903217)
chr3 (335-381)||(5156671-5156717)
chr3 (234-276)||(53390988-53391030)
chr3 (27-75)||(47397277-47397325)
[»] chr2 (3 HSPs)
chr2 (80-309)||(20144790-20145020)
chr2 (80-263)||(20359300-20359484)
chr2 (80-309)||(20168754-20168984)
[»] chr7 (5 HSPs)
chr7 (161-281)||(17708515-17708636)
chr7 (199-298)||(17699445-17699544)
chr7 (199-266)||(17736208-17736275)
chr7 (199-281)||(16722431-16722513)
chr7 (161-298)||(17718339-17718477)


Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 9692740 - 9692345
Alignment:
Q  22 agctatggttgagaaagtggcttctgaatttgagttactagagcacaagcttccttataaactagtgagagtaggtgaattccaaattccaagattcaaa 121  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9692740 agctatggttgagaaagtggcttctgaatttgagttcctagagcacaagcttccttataaactagtgagaataggtgaattccaaattccaagattcaaa 9692641  T
Q  122 ttttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaaa-tggtggactctcttgaag 220  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  9692640 ttttcatttgggcttgaaacttctcgtatgacgaaggagttaggagtgagtttacctttctcttctggaggtttgacaaaaatggtggactctcttgaag 9692541  T
Q  221 gtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgcagtggtggccat 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  9692540 gtcaagacctttctgtttccaacatatttcacaagtctttcattgaagtaaacgaggaaggcactgaagctgctaaggccaatattgcagtggtggccat 9692441  T
Q  321 gtgtatgccaactggaatagactttatagccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgccggacaggt 416  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9692440 gtgtatgccaactggaatagactttatagccgatcaccctttcctatttctaattagagaagatttgacccaaacgatcatctttgccggacaggt 9692345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 23 - 416
Target Start/End: Complemental strand, 9675717 - 9675323
Alignment:
Q  23 gctatggttgagaaagtggcttctgaatttgagttactagagcacaagcttccttataaactagtgagagtaggtgaattccaaattccaagattcaaat 122  Q
    ||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||    
T  9675717 gctatggttgaaaaggtggcttctgaatttgagttcctagagcccaagcttccttataaacgagtgaaagtaggtaatttccaaattccaagattcaaat 9675618  T
Q  123 tttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaac-aaaatggtggactctcttgaagg 221  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||    
T  9675617 tttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaagg 9675518  T
Q  222 tcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgcagtggtggccatg 321  Q
    ||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||| | |||| || |  | | | || | ||    
T  9675517 tcaagacttttctgtttccaacatatttcacaagtctaccattgaagtaaatgaggaaggcactgaagctgctacagccaatgctaaaataggggtcttg 9675418  T
Q  322 tgtatgccaactggaatagactttatagccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgccggacaggt 416  Q
    |||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9675417 tgtgcgccaactggaatagactttatagccgatcaccctttcctatttctaattagagaagattcgacccaaacaatcatctttgccggacaggt 9675323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 290
Target Start/End: Complemental strand, 21464111 - 21463943
Alignment:
Q  123 tttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaaa-tggtggactctcttgaagg 221  Q
    |||| ||||||||||||  ||||  |||| |||| ||| |||| |||  |||||||||||||   |||| ||| |||||| ||||||||||||     |     
T  21464111 tttcttttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttacctttctctgaaggagctttgacaaaaatggtggactctcgaattgc 21464012  T
Q  222 tcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagc 290  Q
    |||| |||||| ||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |||||    
T  21464011 tcaaaacctttatgtgtccaacatatttcacaagtcttttattgaagtaaacgaagaaggtaccgaagc 21463943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 20 - 413
Target Start/End: Original strand, 35162539 - 35162933
Alignment:
Q  20 tcagctatggttgagaaagtggcttctgaatttgagttactagagcacaagcttccttataaactagtgagagtaggtgaattccaaattccaagattca 119  Q
    |||||| |||||||||| ||||||||||| |||||| | |||||| ||| |||||||| |||   ||||  ||||||||  ||| ||||||||| |||||    
T  35162539 tcagctttggttgagaaggtggcttctgattttgagctcctagagaacatgcttccttgtaatagagtgccagtaggtggcttcaaaattccaaaattca 35162638  T
Q  120 aattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaac-aaaatggtggactctcttga 218  Q
    ||||||||| ||||||||||||||||||| || |||||||  ||||||||| |||||||||||||||||||||||| || |||||||||||||| |||||    
T  35162639 aattttcatatgggcttgaaacttctcgtgtgctgaaggatctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactcacttga 35162738  T
Q  219 aggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgcagtggtggcc 318  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||| ||||| ||| ||||||| | ||||||||| |||||   |||| |  |||||    
T  35162739 aggtcaaaaccttttagtttccaacatatttcacaagtctttcattgaagtaaatgagaaaggcaccgtagctgctgcagccagctgtgcacttatggcc 35162838  T
Q  319 atgtgtatgccaactggaatagactttatagccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgccggaca 413  Q
    | |||||| ||||| ||| ||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  35162839 aagtgtattccaaccggagtagactttatagctgatcatcctttcttatttctaattagagaagattcgacccaaacaatcctctttgcgggaca 35162933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 35155509 - 35155913
Alignment:
Q  11 agatggac-atcagctatggttgagaaagtggcttctgaatttgagttactagagcacaagcttccttataaactagtgagagtaggtgaattccaaatt 109  Q
    |||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||  || | |||||||||  ||| |||||    
T  35155509 agatggactatcagctttggttgagaaggtggcttctgaatttgagttgctagagcacaagcttccttataaaacagcgcgagtaggtggcttcaaaatt 35155608  T
Q  110 ccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaac-aaaatggtgg 208  Q
    ||||||||||||||||||| |  ||||||| |||||| |||| |||| ||  ||||||||| |||||||||||||||||| ||||| || ||||||||||    
T  35155609 ccaagattcaaattttcatctaagcttgaatcttctcatatgctgaaagacctaggagtgattttacctttctcttctgggggtttgacaaaaatggtgg 35155708  T
Q  209 actctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgc 308  Q
    ||||||||||||||||| | || || |||  |||||||||||| |||| ||| ||||| ||||||||  |||||||| |||||| ||| ||||||  | |    
T  35155709 actctcttgaaggtcaaaatctctccgttagcaacatatttcagaagtgttttattgaagtaaacgaaaaaggcactaaagctgttgcagccagtactac 35155808  T
Q  309 agtggtggccatgtgtatgccaactggaatagactttatagccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgcc 408  Q
    | |  |  || || |||   |||| ||| ||||||||||||| |||||||||||  ||||| ||||||||||||||| ||||||||| ||| ||||||||    
T  35155809 attatttaccttgggtagatcaaccggactagactttatagctgatcaccctttcttatttttaattagagaagatttgacccaaacaatcctctttgcc 35155908  T
Q  409 ggaca 413  Q
    |||||    
T  35155909 ggaca 35155913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 125 - 296
Target Start/End: Original strand, 15556218 - 15556390
Alignment:
Q  125 tcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaac-aaaatggtggactctcttgaaggtc 223  Q
    ||||||||| |||||||||||  |||| |||||||  ||||||||  ||||||||||||| | |||||||| || |||||||||||||| ||||  ||||    
T  15556218 tcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcccggaggtttgactaaaatggtggactcacttgcgggtc 15556317  T
Q  224 aagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 296  Q
    ||||||| | |||||| |||||||| || |||||||||||  | |||||||| ||||||||||||||||||||    
T  15556318 aagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctgc 15556390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 105 - 304
Target Start/End: Complemental strand, 47397247 - 47397047
Alignment:
Q  105 aaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaac-aaaat 203  Q
    ||||||||||||||||||||||| || ||||||||||||||  |||| |||||||||||||||||| ||||||||||||    ||||||||||| |||||    
T  47397247 aaattccaagattcaaattttcaatttggcttgaaacttctgatatgttgaaggagttaggagtgattttacctttctccctcggaggtttaacaaaaat 47397148  T
Q  204 ggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagt 303  Q
    | |||||| ||| |  |||||| |||||| |||||||||||||||||| |||| ||||||||| ||||| ||| |||||||| ||| |||| |||| |||    
T  47397147 gatggactttctagcgggtcaaaacctttttgtttccaacatatttcagaagtatttcattgaagtaaatgagaaaggcactaaagttgcttcggctagt 47397048  T
Q  304 g 304  Q
    |    
T  47397047 g 47397047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 27 - 296
Target Start/End: Complemental strand, 46236814 - 46236538
Alignment:
Q  27 tggttgagaaagtggcttctgaatttgagttactagagcacaagcttcctta---taaactagtgagagtaggtgaattccaaattccaagattcaaatt 123  Q
    ||||||||||  ||||||||||||||||||||| ||| ||||| ||||||     ||||  ||||   |||||||| ||| | ||||||||||||||  |    
T  46236814 tggttgagaagctggcttctgaatttgagttaccagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatat 46236715  T
Q  124 ttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaac-aaaatggtgga---ctctcttgaa 219  Q
    ||| |||||  |||||||| ||  || |||||||||||||||||||| ||||||||||||| |||||||||| || ||||| |||||    ||| ||||     
T  46236714 ttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaattgtggattcttcttttgag 46236615  T
Q  220 ggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 296  Q
    ||| || |||| | ||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||| ||||||    
T  46236614 ggtgaaaacctatatgtttccaacatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagttgctgc 46236538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 88 - 296
Target Start/End: Original strand, 16025653 - 16025862
Alignment:
Q  88 gagagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttct 187  Q
    |||||||||||| |||  ||||||||| |||||  ||||||||||| |||||||||||  |||| |||||||| | |||||   ||||||||||||| ||    
T  16025653 gagagtaggtgatttcagaattccaaggttcaaggtttcatttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttctctcct 16025752  T
Q  188 ggaggtttaac-aaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactg 286  Q
    |||||||| || ||||||||||||| |||||||  ||||||||| | ||||||   |||||||||||| |||||||| || ||||| || ||||| ||||    
T  16025753 ggaggtttgacaaaaatggtggactttcttgaacatcaagacctctttgtttctcgcatatttcacaaatctttcatcgaagtaaatgaagaaggaactg 16025852  T
Q  287 aagctgctgc 296  Q
    ||| ||||||    
T  16025853 aagttgctgc 16025862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 91 - 309
Target Start/End: Original strand, 5160446 - 5160668
Alignment:
Q  91 agtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctgga 190  Q
    |||||||||||||  |||||||||||||||| ||||||||| |||||||||||||  |||| |||||||||||||||||| |||||||||| ||  || |    
T  5160446 agtaggtgaattcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacctttcactcgtgaa 5160545  T
Q  191 ggtttaac-aaaatggtggac---tctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactg 286  Q
    ||||| || ||||||||||||   |||||||  ||| |   |||||| ||||| || ||||||||||| ||||||||||| ||||| || |||||  |||    
T  5160546 ggtttgacaaaaatggtggactcttctcttgtgggtgatagcctttcagtttctaaaatatttcacaaatctttcattgaagtaaatgaagaaggtgctg 5160645  T
Q  287 aagctgctgcggccagtgttgca 309  Q
    |||||| ||| | ||||| ||||    
T  5160646 aagctgttgcagtcagtgctgca 5160668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 91 - 296
Target Start/End: Complemental strand, 46526378 - 46526169
Alignment:
Q  91 agtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctgga 190  Q
    ||||||||| |||  |||||||| ||||||||||||||||| |||||| |||||||  ||| |||| ||||||| ||||| |||||||||||||| |||     
T  46526378 agtaggtgatttcagaattccaaaattcaaattttcatttgagcttgacacttctcaaatgttgaaagagttagaagtgattttacctttctcttgtggg 46526279  T
Q  191 ggtttaacaaa-atggtggactct---cttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactg 286  Q
    ||||| ||||| || |||||||||   |  | | ||||| ||||||  |||||||| ||||||||||||||| ||||||| ||||| |||| |||||| |    
T  46526278 ggtttgacaaatattgtggactctcaacacgcaagtcaaaacctttacgtttccaaaatatttcacaagtctctcattgaagtaaatgagggaggcaccg 46526179  T
Q  287 aagctgctgc 296  Q
    ||||||||||    
T  46526178 aagctgctgc 46526169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 91 - 296
Target Start/End: Original strand, 5156417 - 5156626
Alignment:
Q  91 agtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctgga 190  Q
    ||||| |||||||  |||||||||||||||| ||||||||| ||||||||||||   |||| | || ||| ||||||||| |||||||||| ||  ||||    
T  5156417 agtagttgaattcagaattccaagattcaaaatttcatttgagcttgaaacttccgatatgttcaaagagctaggagtgattttacctttcactcgtgga 5156516  T
Q  191 ggtttaac-aaaatggtggact---ctcttgaaggtcaaga-cctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcact 285  Q
    ||||| || |||||||||||||   ||||||  || ||| | |||||||||||| || ||||||||||| ||||||||||| ||||| || |||||||||    
T  5156517 ggtttgacaaaaatggtggactctcctcttg-tgggcaatagcctttctgtttctaaaatatttcacaaatctttcattgaagtaaatgaagaaggcact 5156615  T
Q  286 gaagctgctgc 296  Q
    |||||||||||    
T  5156616 gaagctgctgc 5156626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 91 - 296
Target Start/End: Complemental strand, 45883686 - 45883483
Alignment:
Q  91 agtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctgga 190  Q
    ||||||||| |||  |||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||||||  || ||||||||||  ||||    
T  45883686 agtaggtgacttcagaattccaagattcaatgtttcatttgggcttgaaacttctaatatgttgaaggagttaggagtggtttcacctttctctcgtgga 45883587  T
Q  191 ggtttaac-aaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaag 289  Q
     |||| || ||||||||||||| ||    |  ||||||||||| | ||||  |||| |||||| ||||||||||||| || || || |||||||||||||    
T  45883586 agtttgacaaaaatggtggactatc---caaatcaagacctttatatttctcacatttttcactagtctttcattgaagttaatgaagaaggcactgaag 45883490  T
Q  290 ctgctgc 296  Q
    |||||||    
T  45883489 ctgctgc 45883483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 46479994 - 46480171
Alignment:
Q  123 tttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaa-atggtggactctcttgaagg 221  Q
    |||||||||| ||||||||||||  |||| | |||||| |||| |||  |||||||||||||  ||||||| | ||||| |||||| |||||   |   |    
T  46479994 tttcatttggacttgaaacttctgatatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatggtgaactcttcagttag 46480093  T
Q  222 tcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggc 299  Q
    |||| |||||| ||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  46480094 tcaaaacctttgtgtttccaatatatttcacaagtctttcattgaagtaaatgaagaaggcactgaagctgctgcggc 46480171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 297
Target Start/End: Original strand, 46539163 - 46539376
Alignment:
Q  85 agtgagagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctct 184  Q
    |||| |||||||||| |||  |||||||||||||||| |||| |||| |||||||||||||  |||| | |||||| ||||| ||  |||||||||||||    
T  46539163 agtgcgagtaggtgacttcagaattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctct 46539262  T
Q  185 tctggaggtttaac-aaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggca 283  Q
       |||||||| || |||||||||||||||| |  | ||||| |||||| ||||||| |  |||| ||||||||||| ||||| ||||| ||  |||| |    
T  46539263 caaggaggtttgacaaaaatggtggactctcctacaagtcaaaacctttatgtttccgatgtattccacaagtcttttattgaagtaaatgaacaaggaa 46539362  T
Q  284 ctgaagctgctgcg 297  Q
    |  |||||||||||    
T  46539363 ccaaagctgctgcg 46539376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 128 - 298
Target Start/End: Original strand, 46544681 - 46544852
Alignment:
Q  128 tttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaa-atggtggactctcttgaaggtcaag 226  Q
    |||||||||||||||||| |  || |||||||| ||||||||  ||||||||||||| | |||||||| ||||| ||||||||||||| |   | ||||     
T  46544681 tttgggcttgaaacttctggcgtgctgaaggagctaggagtggttttacctttctctacaggaggtttgacaaatatggtggactctcctatggatcaaa 46544780  T
Q  227 acctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcgg 298  Q
    |||||  | ||||||||||||| ||||||||||| ||||| ||||| ||  | || ||||||||||||||||    
T  46544781 accttcatatttccaacatattccacaagtcttttattgaagtaaatgaaaagggaactgaagctgctgcgg 46544852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 301
Target Start/End: Original strand, 46498136 - 46498331
Alignment:
Q  107 attccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaac-aaaatgg 205  Q
    |||||||| |||||  |||||||||  ||||||||||||  |||| | |||||| | || |||  ||| |||||| ||  ||||||||| || |||||||    
T  46498136 attccaaggttcaatatttcatttgaacttgaaacttctgatatgttaaaggagcttggcgtggttttgcctttcactaatggaggtttgactaaaatgg 46498235  T
Q  206 tggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggcca 301  Q
    || |||||  ||   ||||| |||||| ||||||||| ||||| ||||||||||||||||| ||||| || ||||||||  |||||||||||||||    
T  46498236 tgaactctgctgtgagtcaaaacctttatgtttccaaaatattccacaagtctttcattgaagtaaatgaagaaggcaccaaagctgctgcggcca 46498331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 297
Target Start/End: Original strand, 46484156 - 46484419
Alignment:
Q  27 tggttgagaaagtggcttctgaatttgagttactagagcacaagcttccttataaactagtgagagtaggtgaattccaaattccaagattcaaattttc 126  Q
    ||||||| || ||||||||||||||||| |||||| | ||||||||||||| | |   ||||  ||||||||| ||    |||||||  |||||  ||||    
T  46484156 tggttgaaaaggtggcttctgaatttgatttactacaacacaagcttccttttgataaagtggaagtaggtgactttaggattccaaagttcaatatttc 46484255  T
Q  127 atttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaa-atggtggactctcttgaaggtcaa 225  Q
    |||||| ||||||||||||  |||| | |||||| |||| |||  |||||||||||||  ||||||| | ||||| |||||| |||||    ||  ||||    
T  46484256 atttggacttgaaacttctgttatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatggtgaactct----aa--tcaa 46484349  T
Q  226 gacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcg 297  Q
     | |||| |||  |||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||    
T  46484350 aaactttgtgt--ccaatatattgcacaaatctttcattgaagtaaatgaagaaggcactgaagctgctgcg 46484419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 47414217 - 47413941
Alignment:
Q  20 tcagctatggttgagaaagtggcttctgaatttgagttactagagcacaagcttccttataaactagtgagagtaggtgaattccaaattccaagattca 119  Q
    |||||| |||||||||| ||||||||||||| |||||||||| | |||||||||| |  |     ||| | ||||||||| |||  ||||||||||||||    
T  47414217 tcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttcatctttctaaagtcaaagtaggtgacttcagaattccaagattca 47414118  T
Q  120 aattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaaatggtggactctcttg-- 217  Q
    |  |||||||||  |  |||| ||||  |||  ||||||||||||||||| |||||  ||||||||        | |  ||||||||||||||||||       
T  47414117 aggtttcatttgaacaagaaatttctgatatcctgaaggagttaggagtgggtttagatttctctt--------tgactaaaatggtggactctcttcca 47414026  T
Q  218 ----aaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcgg 298  Q
        ||| |||||||| || ||||||| | |||||||||||||||||||| || || || || ||||| ||||||||||||||||    
T  47414025 gatcaagatcaagaccattttgtttcccagatatttcacaagtctttcatcgaagtgaatgaagaaggaactgaagctgctgcgg 47413941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 46236482 - 46236404
Alignment:
Q  339 agactttatagccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgccggacaggtg 417  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||| |||||||  ||| ||| ||||||| |||||||||    
T  46236482 agactttgtagctgatcaccctttcctatttctaattagagaagtttcgaccggaacaatcctctttgctggacaggtg 46236404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 46554121 - 46554026
Alignment:
Q  107 attccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaaa 202  Q
    |||||||| ||| || |||| |||||| |||||  ||||  |||| |||||||||| ||||||| |||||||||||||  ||||||||||||||||    
T  46554121 attccaagtttcgaaatttcttttgggtttgaactttctaatatgctgaaggagttgggagtgattttacctttctctaatggaggtttaacaaaa 46554026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 296
Target Start/End: Complemental strand, 46548940 - 46548750
Alignment:
Q  107 attccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaaa-tgg 205  Q
    ||||||||||||||| | | ||||| ||||||||||||   | || | |||||  |||||||   | ||||||||| | |||| ||||| |||||| |||    
T  46548940 attccaagattcaaaatattatttgagcttgaaacttcaaatgtgctcaaggaactaggagttgatctacctttctatcctggtggtttgacaaaaatgg 46548841  T
Q  206 tggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 296  Q
    || |||||| |   | | || |||||| |||||| || ||||||||||||||||||||||| ||||| || ||||| | ||||||||||||    
T  46548840 tgaactctcctattgataaatacctttatgtttctaaaatatttcacaagtctttcattgaagtaaaagaagaaggtaatgaagctgctgc 46548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 4581197 - 4581132
Alignment:
Q  234 tgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggc 299  Q
    ||||||||| ||||||||||||||||| ||||| ||||| || | ||| |||||||||||||||||    
T  4581197 tgtttccaagatatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctgctgcggc 4581132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 4613654 - 4613589
Alignment:
Q  234 tgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggc 299  Q
    ||||||||| ||||||||||||||||| ||||| ||||| || | ||| |||||||||||||||||    
T  4613654 tgtttccaagatatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctgctgcggc 4613589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 51944076 - 51944185
Alignment:
Q  105 aaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaac-aaaat 203  Q
    ||||||| | ||||||  ||||||||| ||||||| || |||||||| | ||| || ||||||||  ||||||||||||  |||||||||| || |||||    
T  51944076 aaattccgaaattcaatatttcatttgagcttgaagctactcgtatgctaaagaagctaggagtggttttacctttctcacctggaggttttacaaaaat 51944175  T
Q  204 ggtggactct 213  Q
    ||||||||||    
T  51944176 ggtggactct 51944185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 47413889 - 47413821
Alignment:
Q  338 tagactttatagccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttg 406  Q
    |||||||| ||||||| ||||||||  |||||||||||||||||||||| ||| |||| ||| ||||||    
T  47413889 tagactttgtagccgaccaccctttcttatttctaattagagaagattcaaccgaaacaatcctctttg 47413821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 296
Target Start/End: Original strand, 46474037 - 46474301
Alignment:
Q  27 tggttgagaaagtggcttctgaatttgagttactagagcacaagcttccttataaactagtgagagtaggtgaattccaaattccaagattcaaattttc 126  Q
    ||||||| || ||||||||||||| ||| |||||| | ||||||||||||| | |   ||||  ||||||||| ||    |||||||  |||||  ||||    
T  46474037 tggttgaaaaggtggcttctgaatctgatttactacaacacaagcttccttttgataaagtggaagtaggtgactttaggattccaaagttcaatatttc 46474136  T
Q  127 atttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttctcttctggaggtttaacaaaa-tggtggactctcttgaaggtcaa 225  Q
    |||||| |||||||||||   |||| | |||||| |||| |||  |||||||||||||  || |||  | |||||| |||||||||||    ||  ||||    
T  46474137 atttggacttgaaacttccgatatgctaaaggagctaggtgtggttttacctttctctggtgaagggctgacaaaaatggtggactct----aa--tcaa 46474230  T
Q  226 gacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 296  Q
     | |||| | | ||||| ||||| ||||| | ||||||||| ||||| || ||||||||||||||||||||    
T  46474231 aaactttttatgtccaatatattgcacaaatatttcattgaagtaaatgaagaaggcactgaagctgctgc 46474301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 46491029 - 46491086
Alignment:
Q  244 atatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggcca 301  Q
    ||||||||||||||||| ||||||||||| || |||||||| ||||||| ||| ||||    
T  46491029 atatttcacaagtcttttattgatgtaaatgaagaaggcaccgaagctgttgcagcca 46491086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 46532224 - 46532285
Alignment:
Q  235 gtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 296  Q
    ||||| ||||||||||| || ||||||||||| ||||| ||  |||||||||||||||||||    
T  46532224 gtttctaacatatttcaaaattctttcattgaagtaaatgaaaaaggcactgaagctgctgc 46532285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 45903145 - 45903217
Alignment:
Q  109 tccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctttc 181  Q
    ||||| ||||||||||||||||||| |||||  |||||||||| || | ||| ||| ||| ||||||||||||    
T  45903145 tccaaaattcaaattttcatttgggtttgaagtttctcgtatgttgcaagagctagaagtaagtttacctttc 45903217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 5156671 - 5156717
Alignment:
Q  335 gaatagactttatagccgatcacccttttctatttctaattagagaa 381  Q
    ||||||||||| |||| |||||||||||  |||||||||||||||||    
T  5156671 gaatagactttgtagctgatcaccctttcttatttctaattagagaa 5156717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 53390988 - 53391030
Alignment:
Q  234 tgtttccaacatatttcacaagtctttcattgatgtaaacgag 276  Q
    |||||| || ||||||||||||||||||||||| |||||||||    
T  53390988 tgtttcaaatatatttcacaagtctttcattgaagtaaacgag 53391030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 47397325 - 47397277
Alignment:
Q  27 tggttgagaaagtggcttctgaatttgagttactagagcacaagcttcc 75  Q
    ||||||||||  |||||||| |||||||||||||||| ||||| |||||    
T  47397325 tggttgagaacatggcttctaaatttgagttactagaacacaatcttcc 47397277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 309
Target Start/End: Original strand, 20144790 - 20145020
Alignment:
Q  80 aaactagtgagagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctt 179  Q
    |||| ||||| ||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |  ||   | |||||||||||||||  |||||| |    
T  20144790 aaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtggttttaccat 20144889  T
Q  180 tctcttctggaggtttaacaaaa-tggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgagga 278  Q
    ||| | |||||||||| |||||| |||||||||||||||  ||||||  ||||||||||||  ||||||||||||||||||||||    |||||||| ||    
T  20144890 tctttcctggaggtttgacaaaaatggtggactctcttgcgggtcaaagcctttctgtttctcacatatttcacaagtctttcatcagagtaaacgaaga 20144989  T
Q  279 aggcactgaagctgctgcggccagtgttgca 309  Q
    ||| || |||| |||||| || |||| ||||    
T  20144990 aggtaccgaagttgctgcagctagtgctgca 20145020  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 20359300 - 20359484
Alignment:
Q  80 aaactagtgagagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctt 179  Q
    |||| ||||| ||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |  ||   | |||||||||||||||| |||||| |    
T  20359300 aaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgactttaccat 20359399  T
Q  180 tctcttctggaggttt-aacaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcat 263  Q
    ||| | |||||||||| || ||||||||||| ||| | |  ||||||  ||||| ||||||   |||||||||||||||||||||    
T  20359400 tctttcctggaggtttgaaaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcgcatatttcacaagtctttcat 20359484  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 309
Target Start/End: Complemental strand, 20168984 - 20168754
Alignment:
Q  80 aaactagtgagagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgatgaaggagttaggagtgagtttacctt 179  Q
    |||| ||||| ||||||||| ||  ||||||| ||||||||  ||||||||||||||||||||  |  ||   | |||| ||||||||||| |||||| |    
T  20168984 aaacaagtgaaagtaggtgactttaaaattcctagattcaatgtttcatttgggcttgaaactagtgataccctaaaggggttaggagtgattttaccat 20168885  T
Q  180 tctcttctggaggtttaacaaaa-tggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgagga 278  Q
    ||| | |||||||||| |||||| ||||||| ||| | |  ||||||  ||||| ||||||  ||||||||||||||||||||||    |||||||| ||    
T  20168884 tctttcctggaggtttgacaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcacatatttcacaagtctttcatcagagtaaacgaaga 20168785  T
Q  279 aggcactgaagctgctgcggccagtgttgca 309  Q
    ||| || |||| |||||| || |||| ||||    
T  20168784 aggtaccgaagttgctgcagctagtgctgca 20168754  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 17708515 - 17708636
Alignment:
Q  161 ttaggagtgagtttacctttctcttctggaggtttaacaaaa-tggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctt 259  Q
    |||||| ||| ||||||||| |||   |||||||| |||||| |||||||||||| |  | ||||||| |||| |||||||  ||||||||| |||||||    
T  17708515 ttaggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctt 17708614  T
Q  260 tcattgatgtaaacgaggaagg 281  Q
    ||||||| ||||| || |||||    
T  17708615 tcattgaagtaaatgaagaagg 17708636  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 17699445 - 17699544
Alignment:
Q  199 aaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcgg 298  Q
    |||||||||||||||| |  | ||||||| |||| |||||||  ||||||||| |||||||||||||| ||||| || ||||| ||  ||||||| ||||    
T  17699445 aaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacgaaagctgcagcgg 17699544  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 17736208 - 17736275
Alignment:
Q  199 aaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattga 266  Q
    |||||||||||||||| |  | ||||||| ||||||||| ||| ||||||||| ||||||||||||||    
T  17736208 aaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattga 17736275  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 16722431 - 16722513
Alignment:
Q  199 aaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaagg 281  Q
    |||||||||||||||| |  | ||||||| |||| |||||||  ||||||||| |||||||||||||| ||||| || |||||    
T  16722431 aaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaagg 16722513  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 17718339 - 17718477
Alignment:
Q  161 ttaggagtgagtttacctttctcttctggaggtttaacaaaa-tggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctt 259  Q
    |||||| ||| ||||||||| |||   |||||||| |||||| |||||||||||| |  | |||||||  | | ||||||| ||||| |||| |||||||    
T  17718339 ttaggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaaatatttgtttccgacatacttcagaagtctt 17718438  T
Q  260 tcattgatgtaaacgaggaaggcactgaagctgctgcgg 298  Q
     |||||| |||||||| ||||| ||  ||||||| ||||    
T  17718439 gcattgaagtaaacgaagaaggtacaaaagctgcagcgg 17718477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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