View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10249_low_2 (Length: 362)
Name: NF10249_low_2
Description: NF10249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10249_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 29116913 - 29117267
Alignment:
| Q |
1 |
aaataatgtaagcttgagaaaaaatgacaaactatattctaaactgaaaattcttttcataacgagaaaatgttctaatcaaacaaattcgatatcttag |
100 |
Q |
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| T |
29116913 |
aaataatgtaagcttgagaaaaaatgacaaactatattctaaactgaaaattcttttcataacgagaaaatgttctaatcaaacaaattcgatatcttag |
29117012 |
T |
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| Q |
101 |
taactttattctgtcaaaatttctcgattgattggatgacatacctgcttgttccttgttttctgagactctgctgcttggagttggacactggttgttg |
200 |
Q |
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| T |
29117013 |
taactttattctgtcaaaatttctcgattgattggatgacatacctgcttgttccttgttttctgagactctgctgcttggagttggacactggttgttg |
29117112 |
T |
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| Q |
201 |
aggttcatcaattggaacagatatagtcttcacctgtgacatttacatataagaaattgtacctatctcaaattctcatcacatataagaacaaatatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
29117113 |
aggttcatcaattggaacagatatagtcttcacctgtgacatttacatataagaaattgtacctatctcaaattttcatcacatataagaaaaaatatat |
29117212 |
T |
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| Q |
301 |
tacttaccaaattcttaaacataaggttatagaacatccaaatgtacctttgctt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29117213 |
tacttaccaaattcttaaacataaggttatagaacatccaaatgtatctttgctt |
29117267 |
T |
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