View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10249_low_4 (Length: 242)
Name: NF10249_low_4
Description: NF10249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10249_low_4 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 45099480 - 45099704
Alignment:
| Q |
18 |
gcttctatgtttaaagtactttactttgaattagagatgaatggttcttttgttgcttttattttctttaaatttggtggaattgaagacaaaattttgg |
117 |
Q |
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| T |
45099480 |
gcttctatgtttaaagtactttactttgaaatagagatgaatggttcttctgttgcttttattttatttaaatttggtggaattgaagacaaaattttgg |
45099579 |
T |
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| Q |
118 |
tgctcatatggtacttggtagcccttctttctctcaaaaaatgtccagctataactgatttatggtagtttccttatctacaaatttgacgttggtccaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099580 |
tgctcatatggtacttggtagcccttctttctctccaaaaatgtccatctataactcatttatggtagtttccttatctacaaatttgacgttggtccaa |
45099679 |
T |
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| Q |
218 |
tgcaatagtataatcaaaaacccgt |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
45099680 |
tgcaatagtataatcaaaaacccgt |
45099704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 19110502 - 19110564
Alignment:
| Q |
20 |
ttctatgtttaaagtactttactttgaattagagatgaatggttcttttgttgcttttatttt |
82 |
Q |
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| T |
19110502 |
ttctatgtttaaagtactttaatttgaaatagagatgaatgactcttctgtagcttttttttt |
19110564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 12228005 - 12228080
Alignment:
| Q |
167 |
tataactgatttatggtagtttccttatctacaaatttgacgttggtccaatgcaatagtataatcaaaaacccgt |
242 |
Q |
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| T |
12228005 |
tataactgatttatggtagtttccttatctacaaatttgacgccggtccaatgcaatagtataattaaaaacccgt |
12228080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 12227946 - 12228007
Alignment:
| Q |
18 |
gcttctatgtttaaagtactttactttgaattagagatgaatggttcttttgttgcttttat |
79 |
Q |
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|||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |
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| T |
12227946 |
gcttgtatgtttaaagtactttactttgaaatcgagatgaatggttcttctgttgcttttat |
12228007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 35168168 - 35168102
Alignment:
| Q |
140 |
ccttctttctct-caaaaaatgtccagctataactgatttatggtagtttccttatctacaaatttg |
205 |
Q |
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| T |
35168168 |
ccttctttctcttccaaaaatgccctgttataattgatttatggtagtttccttatctacaaatttg |
35168102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 7963310 - 7963367
Alignment:
| Q |
20 |
ttctatgtttaaagtactttactttgaattagagatgaatggttcttttgttgctttt |
77 |
Q |
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| T |
7963310 |
ttctatgtttaaagtactttaatttgaaatagagatgaatgactcttctgtagctttt |
7963367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 18716925 - 18716885
Alignment:
| Q |
20 |
ttctatgtttaaagtactttactttgaattagagatgaatg |
60 |
Q |
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| T |
18716925 |
ttctatgtttaaagtactttaatttgaaatagagatgaatg |
18716885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 14465091 - 14465054
Alignment:
| Q |
23 |
tatgtttaaagtactttactttgaattagagatgaatg |
60 |
Q |
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| T |
14465091 |
tatgtttaaagtactttaatttgaaatagagatgaatg |
14465054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 29467146 - 29467183
Alignment:
| Q |
23 |
tatgtttaaagtactttactttgaattagagatgaatg |
60 |
Q |
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|||||||||||||||||| |||||| |||||||||||| |
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| T |
29467146 |
tatgtttaaagtactttaatttgaaatagagatgaatg |
29467183 |
T |
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