View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10249_low_6 (Length: 227)
Name: NF10249_low_6
Description: NF10249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10249_low_6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 12228288 - 12228062
Alignment:
| Q |
1 |
agataaagaaatagatgtagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12228288 |
agataaagaaatagatgtagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggtaaaatgacatacctgatatgttttcttcac |
12228189 |
T |
|
| Q |
101 |
attgtgcctttcgtttccttccttttctttggaaatgtgaagcactaatactaacttctatacgatgcaattactattttattcagttgttttgaatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12228188 |
attgtgcctttcgtttccttccttttctttggaaatgtgaagcactaatactaacttcaatacaatgcaattactattttattcagttgttttgaatatt |
12228089 |
T |
|
| Q |
201 |
aagttcaaacgggtttttgattatact |
227 |
Q |
| |
|
| |||||||||||||||| |||||||| |
|
|
| T |
12228088 |
atgttcaaacgggtttttaattatact |
12228062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 35167595 - 35167742
Alignment:
| Q |
1 |
agataaagaaatagatg---tagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttctt |
97 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
35167595 |
agataaagaaataggtgatatagaagaataagtaagaaagttaaaattggagtgaatatgcatgcatggtggcaaaatgaactacctgatatg-tttctc |
35167693 |
T |
|
| Q |
98 |
cacattgtgcctttcgtttccttccttttctttggaaatgtgaagcact |
146 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35167694 |
cacattgtgcatttcgtttccttccttttcgttggaaatgtgaagcact |
35167742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45099906 - 45099686
Alignment:
| Q |
1 |
agataaagaaatagatgtagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45099906 |
agataaataaatagatgtagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctcatatgttttcttcac |
45099807 |
T |
|
| Q |
101 |
attgtgcctttcgtttccttccttttctttggaaatgtgaagcactaatactaacttctatacgatgcaattactattttattcagttgttttgaatatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45099806 |
attgtgcctttcgtttccttccttttctttgga------aaacactaatactaacttctatacgatgcaattactattttattcagttgttttgaatatt |
45099713 |
T |
|
| Q |
201 |
aagttcaaacgggtttttgattatact |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
45099712 |
aagttcaaacgggtttttgattatact |
45099686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 17904421 - 17904542
Alignment:
| Q |
41 |
aaattggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcacattgtgcctttcgtttccttccttttctttggaaat---g |
137 |
Q |
| |
|
|||||| | ||||||||||| |||||| ||||||||| |||| | |||||| || |||||| |||||||| |||||||||||||||||| || | |
|
|
| T |
17904421 |
aaattgcagtgaatatgcatacatggttgcaaaatgaactaccacaaatgttt-ctccacattttgcctttcacttccttccttttctttggctatgtgg |
17904519 |
T |
|
| Q |
138 |
tgaagcactaatactaacttcta |
160 |
Q |
| |
|
|||| |||||||| ||||||||| |
|
|
| T |
17904520 |
tgaaacactaatattaacttcta |
17904542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University