View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10250_high_2 (Length: 269)
Name: NF10250_high_2
Description: NF10250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10250_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 43217825 - 43218079
Alignment:
| Q |
5 |
gttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctgggagccagatg |
104 |
Q |
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| T |
43217825 |
gttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctggcagccagatg |
43217924 |
T |
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| Q |
105 |
gacacatttaagccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggtaaatgctgctcgtgttctttgtattgtttt |
204 |
Q |
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| T |
43217925 |
gacacattttagccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggtaaa--ctgcttgtgttctttgtattgtttt |
43218022 |
T |
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| Q |
205 |
taaacttgaaattgttctctactctcatgtttgtgtggttttattttggtctctgct |
261 |
Q |
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| T |
43218023 |
taaacttgaaattgttctctattctcatgtttgtgtggttttattttggtcactgct |
43218079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 43170512 - 43170257
Alignment:
| Q |
4 |
agttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctgggagccagat |
103 |
Q |
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| T |
43170512 |
agttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctggcagccagat |
43170413 |
T |
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| Q |
104 |
ggacacatttaagccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggtaaatgctgctcgtgttctttgtattgttt |
203 |
Q |
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| T |
43170412 |
ggacacattttagccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggtaaa--ctgcttgtgttctttgtattgttt |
43170315 |
T |
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| Q |
204 |
ttaaacttgaaattgttctctactctcatgtttgtgtggttttattttggtctctgct |
261 |
Q |
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| T |
43170314 |
ttaaacttgaaatttttctctattctcatgtttgtgtggttttattttggtcactgct |
43170257 |
T |
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