View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10250_low_2 (Length: 367)
Name: NF10250_low_2
Description: NF10250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10250_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 3639218 - 3639550
Alignment:
| Q |
20 |
ccctaatccccaattgttaaatcaaaaccttaaacttctttcaaaatcacacgataatggcaaagctttcttcaacctctgcaatcaaatgctctcttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3639218 |
ccctaatccccaattgttaaatcaaaaccttaaacttctttcaaaatcacacgataatgtcaaagctttcttcaacctctgcaatcaaatgctctcttgt |
3639317 |
T |
|
| Q |
120 |
tcttcttcccacaatcactacaccttcacccacgcgctcaaagcatgttgttcctatcatgcgcacgccaaaggtcttgaaatccacgcgcgtctcatca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3639318 |
tcttcttcccacaatcactacaccttcacccacgcgctcaaagcatgttgttcctatcatgcgcacgccaaaggtcttgaaatccacgcgcgtctcatca |
3639417 |
T |
|
| Q |
220 |
aatccggtcacatcttcgatggcttcatcaaaaacactttactctatttttacctctcctcaaacgacgtcgtttcagcaacgcgcgttttcaaatcaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3639418 |
aatccggtcacatcttcgatggcttcatcaaaaacactttactctatttttacctctcctcaaacgacgtcgtttcagcaacgcgcgttttcaaatcaat |
3639517 |
T |
|
| Q |
320 |
tccttcacccgacgtagtttcatggacttcact |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3639518 |
tccttcacccgacgtagtttcatggacttcact |
3639550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University