View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10250_low_3 (Length: 362)
Name: NF10250_low_3
Description: NF10250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10250_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15449250 - 15449591
Alignment:
| Q |
1 |
ttacactaaattatgtgatttttcaaattatgtccctagaagtgcttcttgcaaacaagataaaatataacttacatatgaaaatgttaaatgggaacta |
100 |
Q |
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| T |
15449250 |
ttacactaaattatgtgatttttcaaattacgtccctagaagtgcttcttgcaaacaagataaaatataacttgcatattaaaatgtcaaataagaacta |
15449349 |
T |
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| Q |
101 |
acctgaggagcaatgacaatgaagccatgagaagcaacatgttgaataagctgagaataaaacgagttcaaaagaagatatccatgtagaaaaattagta |
200 |
Q |
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| T |
15449350 |
acctgaggtgcaatgacaatgaatccatgagaagcaacatgttgaataagttgagaataaaacgagtttaaaagaagatatccatgtagaaaaagtaaaa |
15449449 |
T |
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| Q |
201 |
gtgggaattctccaccttcaataggagttgcaatcaaaagagactttggtggtggaactgatcatcaacatgtagaaaactttagcacacatgaattata |
300 |
Q |
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| T |
15449450 |
gtgggaattctccaccttcaataggagtagcaatcaagagagattttggtggtggaactg---atcaacatatagaaaactttagcacacatgaattata |
15449546 |
T |
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| Q |
301 |
taggatatcatataatagaagagtaaataaaaattgtaccatttt |
345 |
Q |
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| T |
15449547 |
taggatatcatataatagaagagtaaataaaaattgtaccatttt |
15449591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 101 - 264
Target Start/End: Original strand, 15443752 - 15443915
Alignment:
| Q |
101 |
acctgaggagcaatgacaatgaagccatgagaagcaacatgttgaataagctgagaataaaacgagttcaaaagaagatatccatgtagaaaaattagta |
200 |
Q |
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| T |
15443752 |
acctgaggagcaatgacaatgaagccatgagaagccacatgttggataagctgagaataaaatgagttgtagagaagatatgcatgtaggaaaagtagaa |
15443851 |
T |
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| Q |
201 |
gtgggaattctccaccttcaataggagttgcaatcaaaagagactttggtggtggaactgatca |
264 |
Q |
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| T |
15443852 |
gtggaaattctccaccttcaataggtgtggcaatcaaaagagatcttggtggtggaactgatca |
15443915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 14359540 - 14359570
Alignment:
| Q |
1 |
ttacactaaattatgtgatttttcaaattat |
31 |
Q |
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| T |
14359540 |
ttacactaaattatgtgatttttcaaattat |
14359570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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