View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10250_low_4 (Length: 339)

Name: NF10250_low_4
Description: NF10250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10250_low_4
NF10250_low_4
[»] chr2 (3 HSPs)
chr2 (17-324)||(1747352-1747679)
chr2 (197-234)||(31899459-31899496)
chr2 (191-237)||(40357336-40357382)
[»] chr1 (2 HSPs)
chr1 (201-238)||(17688211-17688248)
chr1 (191-231)||(51246729-51246769)
[»] chr4 (2 HSPs)
chr4 (191-231)||(43031554-43031594)
chr4 (188-236)||(38365899-38365947)
[»] chr6 (1 HSPs)
chr6 (201-234)||(26574566-26574599)
[»] chr5 (1 HSPs)
chr5 (247-324)||(7912954-7913031)
[»] chr7 (1 HSPs)
chr7 (191-231)||(36747171-36747211)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 1747679 - 1747352
Alignment:
Q  17 atattcatgggtgagctaaagtgaataacatagtagaagaaaatgaaagaagaatcaacagttcaaatggagtatttatcttctattgattatcaactct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1747679 atattcatgggtgagctaaagtgaataacatagtagaagaaaatgaaagaagaatcaacagttcaaatggagtatttatcttctattgattatcaactct 1747580  T
Q  117 gagtatcaagggatttctctcaccgccttcaacctaatct-------ctcaccgtctcatcccctatattctccaccctctaaaacactctcctcccctc 209  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  1747579 gagtatcaagggatttctctcaccgccttcaacctaatctctcaagtctcaccgtctcatcccctatattctccaccctctgaaacactctcatcccctc 1747480  T
Q  210 acctccaaactctcaaacaaagtctta-------------aataatattttgtctagtggatcattttatttttgctcttttaggtccattttactaaac 296  Q
    | |||||||||||||||||||||||||             ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1747479 atctccaaactctcaaacaaagtcttagtatttaaaaaacaataatattttatctagtggatcattttatttttgctcttttaggtctattttactaaac 1747380  T
Q  297 ctggagtcgagctccaccatgttggcat 324  Q
    ||||||||||||||||||||||||||||    
T  1747379 ctggagtcgagctccaccatgttggcat 1747352  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 31899459 - 31899496
Alignment:
Q  197 ctctcctcccctcacctccaaactctcaaacaaagtct 234  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  31899459 ctctcctcccctcccctccaaactctcaaacaaagtct 31899496  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 40357382 - 40357336
Alignment:
Q  191 aaaacactctcctcccctcacctccaaactctcaaacaaagtcttaa 237  Q
    ||||||||||||||||||| | |||||||| |||||||||| |||||    
T  40357382 aaaacactctcctcccctcccatccaaactatcaaacaaagccttaa 40357336  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 17688248 - 17688211
Alignment:
Q  201 cctcccctcacctccaaactctcaaacaaagtcttaaa 238  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  17688248 cctcccctcccctccaaactctcaaacaaagtcttaaa 17688211  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 51246729 - 51246769
Alignment:
Q  191 aaaacactctcctcccctcacctccaaactctcaaacaaag 231  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  51246729 aaaaccctctcctcccctcccctccaaactcccaaacaaag 51246769  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 43031594 - 43031554
Alignment:
Q  191 aaaacactctcctcccctcacctccaaactctcaaacaaag 231  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  43031594 aaaacactcccctcccctcccctccaaactctcaaacaaag 43031554  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 38365947 - 38365899
Alignment:
Q  188 tctaaaacactctcctcccctcacctccaaactctcaaacaaagtctta 236  Q
    |||||||| ||| ||||||||| ||||||||||| ||||||||| ||||    
T  38365947 tctaaaactctcccctcccctcccctccaaactcccaaacaaagcctta 38365899  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 26574566 - 26574599
Alignment:
Q  201 cctcccctcacctccaaactctcaaacaaagtct 234  Q
    ||||||||| ||||||||||||||||||||||||    
T  26574566 cctcccctcccctccaaactctcaaacaaagtct 26574599  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 7913031 - 7912954
Alignment:
Q  247 tgtctagtggatcattttatttttgctcttttaggtccattttactaaacctggagtcgagctccaccatgttggcat 324  Q
    |||||||| |||| || | ||| ||||||||||||  |||||| ||||| ||  | ||||||||||||||||||||||    
T  7913031 tgtctagttgatccttctttttctgctcttttaggctcattttgctaaatctataatcgagctccaccatgttggcat 7912954  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 36747211 - 36747171
Alignment:
Q  191 aaaacactctcctcccctcacctccaaactctcaaacaaag 231  Q
    ||||| ||| ||||||||| |||||||||||||||||||||    
T  36747211 aaaaccctcccctcccctcccctccaaactctcaaacaaag 36747171  T

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