View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10251_high_1 (Length: 558)
Name: NF10251_high_1
Description: NF10251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10251_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 253 - 518
Target Start/End: Complemental strand, 38324542 - 38324277
Alignment:
| Q |
253 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattnnnnnnnnggcagcaaagaaacttacattgatacagaagaagtgt |
352 |
Q |
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| T |
38324542 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattaaaaaaaaggcagcaaagaaacttacattgatacagaagaagtgt |
38324443 |
T |
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| Q |
353 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttcttaacacttgtaacaccgatattttaaact |
452 |
Q |
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| T |
38324442 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttatttacacttgtaacaccgatattttaaact |
38324343 |
T |
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| Q |
453 |
gaaggcgtgtccaacaatgttgggcactcaaaattcgtgtttggtgtccatttctgtccttcataa |
518 |
Q |
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| T |
38324342 |
gaaggtgtgtccaacaatgttgggcactcaaaattcgtgtttggtgtccatttctgtccttcataa |
38324277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 38325524 - 38325284
Alignment:
| Q |
14 |
caaagggattacatgccaaaaaattgaatacagtttaacctagtgaattcaaacataattgtatgaaaataacttggatagaaataaaactcaatcacat |
113 |
Q |
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| T |
38325524 |
caaagggattacatgccaaaaaattgaatacagtttaacctagtgaattcaaacataattgtatgaaaataacttcgattgaaataaaactcaatcacat |
38325425 |
T |
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| Q |
114 |
aggaagagagcaacagaggatactatagctacttattcattgaattttcttaaatttgtatttgttttagtcattgattactttgaagtatattgtattg |
213 |
Q |
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| T |
38325424 |
aggaagagagcaacagaggatactatagctacttattcattgaattttcttaaatctgtatttgttttagtcattgattactttgaagtatattgtattg |
38325325 |
T |
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| Q |
214 |
gttaccgtcattgttcttaaacctagccaattagaatttgc |
254 |
Q |
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| T |
38325324 |
gttacagtcattgttcttaaacctagccaattagaatttgc |
38325284 |
T |
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