View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10251_low_3 (Length: 309)

Name: NF10251_low_3
Description: NF10251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10251_low_3
NF10251_low_3
[»] chr7 (7 HSPs)
chr7 (1-107)||(29617808-29617914)
chr7 (108-162)||(223552-223607)
chr7 (123-158)||(26253085-26253120)
chr7 (108-172)||(9939426-9939491)
chr7 (108-172)||(10027618-10027683)
chr7 (108-172)||(29241530-29241595)
chr7 (109-172)||(36698744-36698808)
[»] chr6 (4 HSPs)
chr6 (108-171)||(24608306-24608371)
chr6 (108-172)||(30124176-30124240)
chr6 (123-172)||(11574463-11574512)
chr6 (105-155)||(30832685-30832735)
[»] chr4 (11 HSPs)
chr4 (106-163)||(3850593-3850651)
chr4 (105-158)||(16924662-16924715)
chr4 (108-168)||(31984820-31984881)
chr4 (123-172)||(979385-979434)
chr4 (113-155)||(40089330-40089372)
chr4 (108-155)||(38352507-38352554)
chr4 (191-221)||(3850680-3850710)
chr4 (107-172)||(25887285-25887351)
chr4 (108-172)||(29690934-29690999)
chr4 (123-172)||(45996891-45996940)
chr4 (123-163)||(7443710-7443750)
[»] chr3 (3 HSPs)
chr3 (108-172)||(11467757-11467822)
chr3 (108-172)||(25373625-25373690)
chr3 (123-162)||(40740227-40740266)
[»] chr8 (8 HSPs)
chr8 (106-172)||(45294580-45294647)
chr8 (111-172)||(4322486-4322548)
chr8 (123-172)||(1176226-1176275)
chr8 (108-172)||(33978655-33978720)
chr8 (123-172)||(7587911-7587960)
chr8 (123-172)||(9491942-9491991)
chr8 (108-172)||(15270126-15270191)
chr8 (108-172)||(33963498-33963563)
[»] chr5 (6 HSPs)
chr5 (108-172)||(31068109-31068174)
chr5 (123-172)||(8433576-8433625)
chr5 (108-171)||(35192177-35192240)
chr5 (123-169)||(41842825-41842871)
chr5 (125-155)||(15523691-15523721)
chr5 (125-155)||(39544277-39544307)
[»] chr2 (6 HSPs)
chr2 (191-292)||(52828-52929)
chr2 (107-153)||(5558751-5558797)
chr2 (123-168)||(52955-53000)
chr2 (123-172)||(7763664-7763713)
chr2 (123-166)||(35321186-35321229)
chr2 (123-163)||(34620195-34620235)
[»] chr1 (4 HSPs)
chr1 (123-172)||(12037605-12037653)
chr1 (122-172)||(24184492-24184542)
chr1 (191-292)||(12037669-12037770)
chr1 (123-172)||(52128451-52128500)
[»] scaffold0369 (1 HSPs)
scaffold0369 (108-172)||(14373-14438)
[»] scaffold0027 (1 HSPs)
scaffold0027 (108-155)||(4149-4197)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29617808 - 29617914
Alignment:
Q  1 tcgtaaataactatttccatacaaactcattttgaacctctatgcaactcaactagatcctaaaacgccattgtcatgcattgattccttttcttctttc 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29617808 tcgtaaataactattttcatacaaactcattttgaacctctatgcaactcaactagatcctaaaacgccattgtcatgcattgattccatttcttctttc 29617907  T
Q  101 ataatag 107  Q
    |||||||    
T  29617908 ataatag 29617914  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 223552 - 223607
Alignment:
Q  108 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaattt 162  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  223552 cagggccggcaatgagggggtgcaaacagctctactgagctgggcgtccaaaattt 223607  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 26253085 - 26253120
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaa 158  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26253085 ggggtgcaaacagctcttctgagctgggcctccaaa 26253120  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 9939491 - 9939426
Alignment:
Q  108 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  9939491 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 9939426  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 10027618 - 10027683
Alignment:
Q  108 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  10027618 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 10027683  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 29241595 - 29241530
Alignment:
Q  108 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  29241595 cagggccggccttggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 29241530  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 36698808 - 36698744
Alignment:
Q  109 agggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  36698808 agggccggccttggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 36698744  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 24608371 - 24608306
Alignment:
Q  108 cagggccggccatgagggg--tgcaaacagctctactgagctgggcctccaaaatttgagggccca 171  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||    
T  24608371 cagggccggccatgaggggggtgcaaacagctctactgagctgggcctccaaaattttggggccca 24608306  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 30124240 - 30124176
Alignment:
Q  108 cagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| | ||||||||||||||||||| |||| |||||||||||| |||| ||||||||    
T  30124240 cagggccggcctttaggggtgcaaacagctctaatgagttgggcctccaaattttgggggcccaa 30124176  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 11574463 - 11574512
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||||||||||||||||||||||||| ||| |||| | ||||||    
T  11574463 ggggtgcaaacagctctactgagctgggcctcaaaattttgggtgcccaa 11574512  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 30832735 - 30832685
Alignment:
Q  105 tagcagggccggccatgaggggtgcaaacagctctactgagctgggcctcc 155  Q
    |||||||| || || ||||||||||||||||||| | ||||||||||||||    
T  30832735 tagcaggggcgtccttgaggggtgcaaacagctcaaatgagctgggcctcc 30832685  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 3850593 - 3850651
Alignment:
Q  106 agcagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttg 163  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3850593 agcagggccggccatgagggggtgcaaacagctatactgagctgggcctccaaaatttg 3850651  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 16924715 - 16924662
Alignment:
Q  105 tagcagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaa 158  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  16924715 tagcagggccggccttgaggggtacaaacagctctactgagctgggccttcaaa 16924662  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 31984881 - 31984820
Alignment:
Q  108 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggc 168  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  31984881 cagggccggccttgagggggtgcaaacagctctactgagccgggcctccaaaatttgggggc 31984820  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 979385 - 979434
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  979385 ggggtgcaaacagctctactgagctgggcctcctaaatttggaggcccaa 979434  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 40089330 - 40089372
Alignment:
Q  113 ccggccatgaggggtgcaaacagctctactgagctgggcctcc 155  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  40089330 ccggccatgaggggtgcaaacagctcaacagagctgggcctcc 40089372  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 38352554 - 38352507
Alignment:
Q  108 cagggccggccatgaggggtgcaaacagctctactgagctgggcctcc 155  Q
    |||| |||||| ||||||||||||||||||| || |||||||||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctgggcctcc 38352507  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 3850680 - 3850710
Alignment:
Q  191 atatatgctgcatggaaataaataatatata 221  Q
    |||||||||||||||||||||||||||||||    
T  3850680 atatatgctgcatggaaataaataatatata 3850710  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 25887351 - 25887285
Alignment:
Q  107 gcagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  25887351 gcagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 25887285  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 29690999 - 29690934
Alignment:
Q  108 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  29690999 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 29690934  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 45996940 - 45996891
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||||||||||| |||||||| |||| |||||||  |||||||    
T  45996940 ggggtgcaaacagctctaccgagctgggtctcccaaatttggaggcccaa 45996891  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 7443710 - 7443750
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttg 163  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  7443710 ggggtgcaaacagctctaccgaaccgggcctccaaaatttg 7443750  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 11467757 - 11467822
Alignment:
Q  108 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||    
T  11467757 cagggctggccatgagggggtgcaaacagctctactgagctgggccttcaaaattttagggcccaa 11467822  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 25373690 - 25373625
Alignment:
Q  108 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  25373690 cagggccgaccatgagggggtgcaaacagctctactgagctgggcctccaaaattttggggcccaa 25373625  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 40740227 - 40740266
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaattt 162  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  40740227 ggggtgcaaacagctctactgagttgggcctcctaaattt 40740266  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 45294647 - 45294580
Alignment:
Q  106 agcagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  45294647 agcagggccgtccttgagggggtgcaaacagctctaatgagctgggcctccaaaatttgggggcccaa 45294580  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 4322548 - 4322486
Alignment:
Q  111 ggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| ||||||  ||||||||    
T  4322548 ggccggccatgagggggtgcaaacagctctattgagctgggcctcctaaattttggggcccaa 4322486  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 1176275 - 1176226
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  1176275 ggggtgcaaacagctctactgagctagacctccaaaatttgggggcccaa 1176226  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 33978720 - 33978655
Alignment:
Q  108 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||  |||||||    
T  33978720 cagggccggccttgagggggtgcaaacagctctactgagctgagcctccaaattttggaggcccaa 33978655  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 7587911 - 7587960
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||||||||||||| |||||  |||||||||| || ||||||||    
T  7587911 ggggtgcaaacagctctactaagctgaacctccaaaatatgggggcccaa 7587960  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 9491991 - 9491942
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||||||||||||||||||| ||| |||| |||  ||||||||    
T  9491991 ggggtgcaaacagctctactgagctggaccttcaaattttaggggcccaa 9491942  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 15270191 - 15270126
Alignment:
Q  108 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  15270191 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 15270126  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 33963563 - 33963498
Alignment:
Q  108 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||  |||||||| ||||  |||||||    
T  33963563 cagggccggccttgagggggtgcaaacagctctactgcgctgaacctccaaattttggaggcccaa 33963498  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 31068174 - 31068109
Alignment:
Q  108 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||  ||||||||    
T  31068174 cagggccggccataagggggtgcagacagctctactgagctgggcctccaaaattttggggcccaa 31068109  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 8433625 - 8433576
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  8433625 ggggtgcaaacagctctaatgagctgggcctccaaattttgggggcccaa 8433576  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 35192177 - 35192240
Alignment:
Q  108 cagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaaatttgagggccca 171  Q
    ||||||||| | || ||||||||||||||||||||||||||| |||||||| |||  |||||||    
T  35192177 cagggccggtcttgtggggtgcaaacagctctactgagctggacctccaaattttaggggccca 35192240  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 41842825 - 41842871
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcc 169  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  41842825 ggggtacaaacagctctactgagctgggccttcaaaatttgggggcc 41842871  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 15523691 - 15523721
Alignment:
Q  125 ggtgcaaacagctctactgagctgggcctcc 155  Q
    |||||||||||||||||||||||||||||||    
T  15523691 ggtgcaaacagctctactgagctgggcctcc 15523721  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 39544277 - 39544307
Alignment:
Q  125 ggtgcaaacagctctactgagctgggcctcc 155  Q
    |||||||||||||||||||||||||||||||    
T  39544277 ggtgcaaacagctctactgagctgggcctcc 39544307  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 52929 - 52828
Alignment:
Q  191 atatatgctgcatggaaataaataatatatacatgcagcgcggaaggttatcatttattcctaaatggaagagcggtaagaatgggaatttacattgcat 290  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||  || |||  |||  ||||||||  ||| ||||||||||||||| | ||||||||    
T  52929 atatatgctgcatggaaataaataatatatacatgtggcgtggaaaattttcaagtatgtctaaatggttgagtggtaagaatgggaatctgcattgcat 52830  T
Q  291 ag 292  Q
    ||    
T  52829 ag 52828  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 5558797 - 5558751
Alignment:
Q  107 gcagggccggccatgaggggtgcaaacagctctactgagctgggcct 153  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5558797 gcagggccgggcatgaggggtgcaaacagctctattgagctgggcct 5558751  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 53000 - 52955
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggc 168  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  53000 ggggtgcaagcagctctactgagctgggcctccaaaatttgggggc 52955  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 7763664 - 7763713
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||||||||||||||| ||||| ||||||||||| | ||||||    
T  7763664 ggggtgcaaacagctctactgagttgggcttccaaaatttgggagcccaa 7763713  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 35321229 - 35321186
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagg 166  Q
    |||||||||||||||||||||| ||||||||||||  |||||||    
T  35321229 ggggtgcaaacagctctactgaactgggcctccaatttttgagg 35321186  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 34620235 - 34620195
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttg 163  Q
    |||||||||||| |||||||||||| |||||||||| ||||    
T  34620235 ggggtgcaaacaactctactgagctaggcctccaaattttg 34620195  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 12037605 - 12037653
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12037605 ggggtgcaaacagctctactgagctgggcctccaaaattt-agggcccaa 12037653  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 24184542 - 24184492
Alignment:
Q  122 aggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||||||||| || ||||||||||||||||| |||| ||||||||    
T  24184542 aggggtgcaaacagctatattgagctgggcctccaaattttgggggcccaa 24184492  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 12037669 - 12037770
Alignment:
Q  191 atatatgctgcatggaaataaataatatatacatgcagcgcggaaggttatcatttattcctaaatggaagagcggtaagaatgggaatttacattgcat 290  Q
    |||||||||||| ||||||||||| ||||||| ||  ||||| || ||| |||  |||  |||| |||  |||||||||||||||||| ||  |||||||    
T  12037669 atatatgctgcacggaaataaatagtatatacttgtggcgcgaaaagttttcaagtatgtctaactggccgagcggtaagaatgggaaattgtattgcat 12037768  T
Q  291 ag 292  Q
    ||    
T  12037769 ag 12037770  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 52128500 - 52128451
Alignment:
Q  123 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    |||||||||||||||||| || ||||||||||| |||||||  |||||||    
T  52128500 ggggtgcaaacagctctattgggctgggcctcctaaatttggaggcccaa 52128451  T

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Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 14373 - 14438
Alignment:
Q  108 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 172  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  14373 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 14438  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 4149 - 4197
Alignment:
Q  108 cagggccggccatgag-gggtgcaaacagctctactgagctgggcctcc 155  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  4149 cagggccggccctgagagggtgcaaacagctcaacagagctgggcctcc 4197  T

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