View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10251_low_6 (Length: 247)

Name: NF10251_low_6
Description: NF10251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10251_low_6
NF10251_low_6
[»] chr3 (3 HSPs)
chr3 (8-239)||(14688368-14688599)
chr3 (11-239)||(7360370-7360598)
chr3 (8-239)||(10787194-10787425)
[»] chr7 (2 HSPs)
chr7 (8-239)||(14328899-14329130)
chr7 (5-229)||(18166544-18166769)
[»] chr2 (3 HSPs)
chr2 (11-239)||(24954749-24954977)
chr2 (5-144)||(23195852-23195991)
chr2 (5-151)||(23621449-23621595)
[»] chr8 (1 HSPs)
chr8 (8-239)||(1730012-1730243)
[»] chr1 (2 HSPs)
chr1 (5-239)||(22081008-22081242)
chr1 (57-239)||(41375346-41375528)
[»] scaffold0897 (1 HSPs)
scaffold0897 (5-158)||(3832-3985)
[»] scaffold0108 (1 HSPs)
scaffold0108 (5-144)||(38947-39086)
[»] scaffold0064 (1 HSPs)
scaffold0064 (5-144)||(32652-32791)
[»] scaffold0051 (1 HSPs)
scaffold0051 (5-159)||(74471-74625)
[»] scaffold0304 (2 HSPs)
scaffold0304 (5-151)||(12276-12422)
scaffold0304 (5-151)||(18027-18173)
[»] chr4 (2 HSPs)
chr4 (5-151)||(14562226-14562372)
chr4 (5-144)||(13284375-13284514)
[»] scaffold0040 (1 HSPs)
scaffold0040 (5-104)||(36021-36120)
[»] scaffold0319 (1 HSPs)
scaffold0319 (5-150)||(19439-19584)
[»] scaffold0022 (1 HSPs)
scaffold0022 (5-104)||(28656-28755)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 14688599 - 14688368
Alignment:
Q  8 ctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagca 107  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14688599 ctgcgatagcgcgcgacgtttcttgtctccaaaagagaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagca 14688500  T
Q  108 cgtcgaagtatagggcgggcacagagccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggt 207  Q
    ||||||| || ||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||  |||||||||| ||||||| |||||||||    
T  14688499 cgtcgaaatacagggcggtcacagagccagcatccatggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggt 14688400  T
Q  208 gcacctcaaaatgcagaacatgtgatgtccat 239  Q
    ||||||||||||||||||||||||||||||||    
T  14688399 gcacctcaaaatgcagaacatgtgatgtccat 14688368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 7360598 - 7360370
Alignment:
Q  11 cgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgt 110  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||| ||||| ||||||||||| |||||| |||||||||||||| ||||    
T  7360598 cgatagcgcgcgacgtttcgtgtctccaaaagagacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgt 7360499  T
Q  111 cgaagtatagggcgggcacagagccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgca 210  Q
    ||||||| || |||| |||||||||||||||||||||||||||||  || |||||||| |||||||   |||||||||||||||||| ||||||||| ||    
T  7360498 cgaagtacagagcggtcacagagccagcatccatggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtaca 7360399  T
Q  211 cctcaaaatgcagaacatgtgatgtccat 239  Q
    ||||||||||||||||||||| |||||||    
T  7360398 cctcaaaatgcagaacatgtggtgtccat 7360370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 10787194 - 10787425
Alignment:
Q  8 ctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagca 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||| || ||| |||||  |||||||||||||| |    
T  10787194 ctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagta 10787293  T
Q  108 cgtcgaagtatagggcgggcacagagccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggt 207  Q
    | |||||||| ||||||| |||||||||||| ||||| ||||||| || |||||||||||  ||||| ||  |||||||||| || |||| |||||||||    
T  10787294 catcgaagtacagggcggtcacagagccagcgtccatagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggt 10787393  T
Q  208 gcacctcaaaatgcagaacatgtgatgtccat 239  Q
     ||||||| |||||||||||||||||||||||    
T  10787394 acacctcagaatgcagaacatgtgatgtccat 10787425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 14329130 - 14328899
Alignment:
Q  8 ctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagca 107  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |    
T  14329130 ctgcgatagcgcgcgacgtttcgtgtctccaaaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagta 14329031  T
Q  108 cgtcgaagtatagggcgggcacagagccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggt 207  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||  |||||||||| ||||||| |||||||||    
T  14329030 cgtcgaagtacagagcggtcacagagccagcatccatggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggt 14328931  T
Q  208 gcacctcaaaatgcagaacatgtgatgtccat 239  Q
     |||||||||||||||||||||||||||||||    
T  14328930 acacctcaaaatgcagaacatgtgatgtccat 14328899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 18166769 - 18166544
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttctt-gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagc 103  Q
    ||||||||||| |||||||| ||| || ||||||||||||||||| || |||   || |||  |||||||||||| ||||||||||| ||||| ||||||    
T  18166769 tccctgcgataacgcgcaacatttttttgtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagc 18166670  T
Q  104 agcacgtcgaagtatagggcgggcacagagccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaact 203  Q
    |  || || ||||| || |||| |||||| ||||||||||| || ||| | ||||| |  | ||  ||||| ||  | ||||||  |||||||| ||| |    
T  18166669 attacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgaatt 18166570  T
Q  204 gggtgcacctcaaaatgcagaacatg 229  Q
    | ||||| ||||||||||| ||||||    
T  18166569 gagtgcatctcaaaatgcaaaacatg 18166544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 24954749 - 24954977
Alignment:
Q  11 cgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgt 110  Q
    ||||| ||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  24954749 cgatatcgcgcgacgtttcgtgtctccagaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgt 24954848  T
Q  111 cgaagtatagggcgggcacagagccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgca 210  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||  | |||||||| |||| || ||||||||| ||    
T  24954849 cgaagtacagagcggtcacagagccagcatccatggcattcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtaca 24954948  T
Q  211 cctcaaaatgcagaacatgtgatgtccat 239  Q
    ||||||||||||||||||||| |||||||    
T  24954949 cctcaaaatgcagaacatgtgttgtccat 24954977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 23195991 - 23195852
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||| || |||   || |||  |||||||||||| ||||||||||| ||||| |||||||    
T  23195991 tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagca 23195892  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccat 144  Q
      || || ||||| || |||| |||||| |||||||||||    
T  23195891 ttacatcaaagtaaagagcggtcacagaaccagcatccat 23195852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 23621595 - 23621449
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||| || |||   || |||  |||||| ||||| ||||||||||| ||||| |||||||    
T  23621595 tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagca 23621496  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccatggcattc 151  Q
      || || ||||| || |||| |||||| ||||||||||| ||||||    
T  23621495 ttacatcaaagtaaagagcggtcacagaaccagcatccatagcattc 23621449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 1730012 - 1730243
Alignment:
Q  8 ctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagca 107  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |||| || ||| | |||  ||| |||||||||| |    
T  1730012 ctgcgatagcgcgcgacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagta 1730111  T
Q  108 cgtcgaagtatagggcgggcacagagccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggt 207  Q
    | |||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||  ||||| ||| |||||||||| | ||||| |||||| ||    
T  1730112 catcgaagtacagggcggtcacagagccagcgtccatagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagt 1730211  T
Q  208 gcacctcaaaatgcagaacatgtgatgtccat 239  Q
     |||||||||||||||||||| ||||||||||    
T  1730212 acacctcaaaatgcagaacatatgatgtccat 1730243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 22081008 - 22081242
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||  ||| ||||||||||||||||| || |||||||||||||    
T  22081008 tccctgcgatagcgcgcgacgtttcttgtctccaaaagagaccagaaatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagca 22081107  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactg 204  Q
    | ||||||||||| || |||| |||||| |||||||||||||| ||||| || || |||| ||  ||||| ||  | ||||||  ||||| ||  || ||    
T  22081108 gtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattg 22081207  T
Q  205 ggtgcacctcaaaatgcagaacatgtgatgtccat 239  Q
    ||| || ||||||||||| ||||| ||||||||||    
T  22081208 ggtacatctcaaaatgcaaaacatatgatgtccat 22081242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 239
Target Start/End: Complemental strand, 41375528 - 41375346
Alignment:
Q  57 gaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacagagccagcatccatggcattcttcag 156  Q
    |||||||| |||||| |||| || ||| |||||  |||||||||||||| || |||||||| ||||||| |||||||||||| ||||| |||||||||||    
T  41375528 gaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattcttcag 41375429  T
Q  157 caagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtgatgtccat 239  Q
    |||||||||||  ||||| ||  |||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  41375428 caagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat 41375346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0897 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0897
Description:

Target: scaffold0897; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 3985 - 3832
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||| || |||   || |||  |||||||||||| ||||| ||||| ||||| |||||||    
T  3985 tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagca 3886  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccatggcattcttcagca 158  Q
      || || ||||| || |||| |||||| |||||||||||||| ||||| ||||    
T  3885 ttacatcaaagtaaagagcggtcacagaaccagcatccatggcgttcttaagca 3832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 38947 - 39086
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| | ||||||||||||||||| || |||   ||||||  |||||||||||| ||||||||||| ||||| |||||||    
T  38947 tccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagca 39046  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccat 144  Q
      || || ||||| || |||| |||||| |||||||||||    
T  39047 ttacatcaaagtaaagagcggtcacagaaccagcatccat 39086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 32791 - 32652
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| | ||||||||||||||||| || |||   ||||||  |||||||||||| ||||||||||| ||||| |||||||    
T  32791 tccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagca 32692  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccat 144  Q
      || || ||||| || |||| |||||| |||||||||||    
T  32691 ttacatcaaagtaaagagcggtcacagaaccagcatccat 32652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 74471 - 74625
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    |||||||||||||||||||| ||| | ||||||||||||||||| || |||   || |||  |||||||||||||||||||||||| || || |||| ||    
T  74471 tccctgcgatagcgcgcaacatttttcgtctccaaaagagaccaaaactcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcacca 74570  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccatggcattcttcagcaa 159  Q
      || || ||||| || |||| |||||| ||||||||||| || ||||| |||||    
T  74571 ttacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcttaagcaa 74625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 12422 - 12276
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||| || |||   ||||||  || ||||||||| |||||| |||| |||||||||||||    
T  12422 tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagca 12323  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccatggcattc 151  Q
      || |  ||||| || |||  |||||||||||| ||||| ||||||    
T  12322 ttacatgaaagtaaagagcgctcacagagccagcgtccatagcattc 12276  T

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Target: scaffold0304; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 18173 - 18027
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||| || |||   ||||||  || ||||||||| |||||| |||| |||||||||||||    
T  18173 tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagca 18074  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccatggcattc 151  Q
      || |  ||||| || |||  |||||||||||| ||||| ||||||    
T  18073 ttacatgaaagtaaagagcgctcacagagccagcgtccatagcattc 18027  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 14562372 - 14562226
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| | ||||||||||||||||| || |||   ||||||  || || |||||| ||||||||||| | |||||||||||    
T  14562372 tccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagca 14562273  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccatggcattc 151  Q
      || || ||||| || |||  |||||||||||| ||||| ||||||    
T  14562272 ttacatcaaagtaaagagcgctcacagagccagcgtccatagcattc 14562226  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 13284514 - 13284375
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| || ||||| ||  | ||||||||||||||||| || |||   || |||  || ||||||||| ||||||||||| |||||||||||||    
T  13284514 tccctgcgataacgagcaacattcttcgtctccaaaagagaccaaaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagca 13284415  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccat 144  Q
      || || ||||| || |||  |||||||||||| |||||    
T  13284414 ttacatcaaagtaaagagcgctcacagagccagcgtccat 13284375  T

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Target: scaffold0040 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 36021 - 36120
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||  |||||||||||||||||||||| |||   || |||  || | ||||||| ||||||||||| |||||||||||||    
T  36021 tccctgcgataacgcgcaacattctttgtctccaaaagagaccagaagtcattgaagagttcagtgatatcaggagtgataccgtcaagcgccctcagca 36120  T

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Target: scaffold0319 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 19439 - 19584
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||| || |||   ||||||  || || |||||| ||||||||||| | |||| |||| |    
T  19439 tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccatcagaa 19538  T
Q  105 gcacgtcgaagtatagggcgggcacagagccagcatccatggcatt 150  Q
      || || ||||| || |||  |||||||||||| ||||| |||||    
T  19539 ttacatcaaagtaaagagcgctcacagagccagcgtccatagcatt 19584  T

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Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 28656 - 28755
Alignment:
Q  5 tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagca 104  Q
    ||||||||||| |||||||| ||| | ||||||||||||||||| || |||   || |||  || ||||||| | ||||||||||| |||||||||||||    
T  28656 tccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcaatgaagagttcagtggtatcatgagtgataccgtcaagcgccctcagca 28755  T

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