View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10252_high_2 (Length: 227)
Name: NF10252_high_2
Description: NF10252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10252_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 40093305 - 40093494
Alignment:
| Q |
19 |
acatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctc |
118 |
Q |
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| T |
40093305 |
acatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctc |
40093404 |
T |
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| Q |
119 |
tcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattctttt |
208 |
Q |
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| T |
40093405 |
tcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattctttt |
40093494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 40062653 - 40062803
Alignment:
| Q |
19 |
acatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctc |
118 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |
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| T |
40062653 |
acatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggcaacaacactcttgatctc |
40062752 |
T |
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| Q |
119 |
tcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagact |
169 |
Q |
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| T |
40062753 |
tcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagact |
40062803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 40081002 - 40081166
Alignment:
| Q |
19 |
acatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctc |
118 |
Q |
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|||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40081002 |
acatcagaactatggagccttttttgacacagtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctc |
40081101 |
T |
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| Q |
119 |
tcctctcggaagtggacatatcaggtcagtctt-cacttttgatcgaagactatttattagtctt |
182 |
Q |
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|||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||| |||| |
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| T |
40081102 |
tcctctcggaagtggacatatcaggtcaatcttaaatttttgatcgaaaactatttattattctt |
40081166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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