View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10252_low_2 (Length: 298)
Name: NF10252_low_2
Description: NF10252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10252_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 40088077 - 40087817
Alignment:
| Q |
23 |
tttcaaaatataaaaaccatatccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
122 |
Q |
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| T |
40088077 |
tttcaaaatataaaaaccatatccttgtgaataa-ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
40087979 |
T |
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| Q |
123 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatcttt |
222 |
Q |
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| T |
40087978 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatcttt |
40087879 |
T |
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| Q |
223 |
caaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgat |
284 |
Q |
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| T |
40087878 |
caaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgat |
40087817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 40062255 - 40061970
Alignment:
| Q |
1 |
aataacacagggtctttgagagtttcaaaatataaaaaccata---tccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcat |
97 |
Q |
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| T |
40062255 |
aataatacaggctctttgagactttcaaaacattagaaccataaaattctagtgaataa-ttacctgcaagctttccgtttacgaaagcatgaagggcat |
40062157 |
T |
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| Q |
98 |
ggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacaga |
197 |
Q |
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| T |
40062156 |
ggccgagtgattcaatgtgaagtacagtttgagaaccaagatcatccttaagatcaacgcttcaaaagaatataatagaagtgttatcgagaagtacaga |
40062057 |
T |
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| Q |
198 |
atcatcagtcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgat |
284 |
Q |
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| T |
40062056 |
atcatcgttcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagcggtgat |
40061970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 40080330 - 40080107
Alignment:
| Q |
58 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgc |
157 |
Q |
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| T |
40080330 |
ttaccagcaagcttgccgtttatgaaagcatgaagggcatggccaagtgattcaatgtgcaggacagtttgagaaccgggatcatccgcaagatcaaggc |
40080231 |
T |
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| Q |
158 |
ttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtacca |
257 |
Q |
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| T |
40080230 |
tttaaaa-aatacaagagaagtgttatcaagaagtacataatcatcggtcaaagcaaatatctttcaaatttggaggcttgtgtaccttaatgagtacca |
40080132 |
T |
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| Q |
258 |
caagtagtcacttctatcagctgtg |
282 |
Q |
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||| || |||||||||||||||||| |
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| T |
40080131 |
caaataatcacttctatcagctgtg |
40080107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 22013454 - 22013525
Alignment:
| Q |
58 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttga |
129 |
Q |
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| T |
22013454 |
ttaccagcaagcttcccatttacaaaagcatgaagggcatggccaagggattcaatgtgaagaacaggttga |
22013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 22013633 - 22013672
Alignment:
| Q |
239 |
tataccttaatgagtaccacaagtagtcacttctatcagc |
278 |
Q |
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| T |
22013633 |
tataccttaatgagtaccataagtagtcacttctatcagc |
22013672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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