View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10252_low_4 (Length: 255)
Name: NF10252_low_4
Description: NF10252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10252_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 44026400 - 44026156
Alignment:
| Q |
11 |
agaagcaaaggtgaaagtttttctgtttctaagatatggctttggtctaagaagagaaaatttactagctctaatgttgattttccttgattttcttatt |
110 |
Q |
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| T |
44026400 |
agaaccaaaggtgaaagtttttctgtttctaagatatggctttggtctaagaagagaaaatttactagctctaatgttgattttccttgattttcttatt |
44026301 |
T |
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| Q |
111 |
gtaagaaactgagaaaggtaaaatatatgatgaagaagtttcattttctatctagaattgcatgtctatattaatcctcttgttttcaatgacatacctt |
210 |
Q |
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| T |
44026300 |
gtaagaaactgagaaaggtaaaatatatgatgaagaagtttcattttctatctagaattgcatgtctatattaatcctcttgttttcaatgacatacctt |
44026201 |
T |
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| Q |
211 |
aaagataagtacttagatttatgtttggttcttttactttgtctt |
255 |
Q |
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| T |
44026200 |
aaagataagtacttagatttatgtttggttcttttactttgtctt |
44026156 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 15103206 - 15103160
Alignment:
| Q |
17 |
aaaggtgaaagtttttctgtttctaagatatggctttggtctaagaa |
63 |
Q |
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| T |
15103206 |
aaaggtgaaagtttttctgtttcaaagatttggcaatggtctaagaa |
15103160 |
T |
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