View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10253_low_1 (Length: 429)
Name: NF10253_low_1
Description: NF10253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10253_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 28907986 - 28908388
Alignment:
| Q |
20 |
acaaaggtaaattccagcacacttatgtaaactaactaagcaaaccaaaatatagagaatttacctggccaactcgtccaaatccacaaataatgatatg |
119 |
Q |
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| T |
28907986 |
acaaaggtaaattccagcacatttatgtaaactaactaagcaaaccaaaatatagagaatttacctggccaactcgtccaaatccacaaataatgatatg |
28908085 |
T |
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| Q |
120 |
atcttgcagatcatctgtctgtaaaagatgacatccaaaattcagtaactactaagtttgtacgtcaactccaaataaaaaattgtaaatggcaaaacta |
219 |
Q |
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| T |
28908086 |
atcttgcagatcatctgtctgtaaaagatgacatccaaaattcagtaactactaagtttgtacgtcaactccaaataaaaaaatgtaaatggcaaaacta |
28908185 |
T |
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| Q |
220 |
caggtgtcagtgtcagagtaggtgcttcatagattctaaggataaaaatttatgaccatgtgcaactaacgaagttacagggctgcaaccaatttaagag |
319 |
Q |
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| T |
28908186 |
caggtgtcagtgtcagagtaggtgcttcatagattctaaggataaaaatttatgaccatgtgcaactaacgaagttacagggctgcaaccaatttaagag |
28908285 |
T |
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| Q |
320 |
attttacctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatcagctggcctcctgcagctagccatggagtgatgtc |
419 |
Q |
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| T |
28908286 |
attttacctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatcagctggcctcctgcagctagccatggagtgatggc |
28908385 |
T |
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| Q |
420 |
cat |
422 |
Q |
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| T |
28908386 |
cat |
28908388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 410
Target Start/End: Complemental strand, 11847897 - 11847812
Alignment:
| Q |
325 |
acctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatcagctggcctcctgcagctagccatgg |
410 |
Q |
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| T |
11847897 |
acctcactttctacaggtagtaagcttcgaacatcatgttgctcaaaacgggaagcaatcagctggcctccttcgcctagccatgg |
11847812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 11848228 - 11848163
Alignment:
| Q |
82 |
acctggccaactcgtccaaatccacaaataatgatatgatcttgcagatcatctgtctgtaaaaga |
147 |
Q |
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| T |
11848228 |
acctggccaactcgcccaaatccacaaataatgatatgatcacgcagatcgtctgtctgaaaaaga |
11848163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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