View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10253_low_2 (Length: 408)
Name: NF10253_low_2
Description: NF10253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10253_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 43258836 - 43259217
Alignment:
| Q |
17 |
ataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgac |
116 |
Q |
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|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43258836 |
ataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgac |
43258935 |
T |
|
| Q |
117 |
agggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttcca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
43258936 |
agggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacattgctaaccttcca |
43259035 |
T |
|
| Q |
217 |
ttcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccgg |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259036 |
ttcttaacttccttcagctttaattccttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccgg |
43259135 |
T |
|
| Q |
317 |
aacctccaagccctttctcaagtcctaagaagtattgtttacccatggagccaggattgtaccaatcttggaatcttctgtg |
398 |
Q |
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| T |
43259136 |
aacctccaagccctttctcaagtcctaagaagtattgttttcccatggagccaggattgtaccaatcttggaatcttctgtg |
43259217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 43255570 - 43255951
Alignment:
| Q |
17 |
ataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgac |
116 |
Q |
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|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255570 |
ataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgac |
43255669 |
T |
|
| Q |
117 |
agggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttcca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
43255670 |
agggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacattgctaaccttcca |
43255769 |
T |
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| Q |
217 |
ttcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255770 |
ttcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccgg |
43255869 |
T |
|
| Q |
317 |
aacctccaagccctttctcaagtcctaagaagtattgtttacccatggagccaggattgtaccaatcttggaatcttctgtg |
398 |
Q |
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| T |
43255870 |
aacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttggagtcttctgtg |
43255951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 59 - 362
Target Start/End: Original strand, 43247615 - 43247918
Alignment:
| Q |
59 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac |
158 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac |
43247714 |
T |
|
| Q |
159 |
tcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctca |
258 |
Q |
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|| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43247715 |
tcttgtaactagagcttgaacaaagtaacccaatattgccaacatagctaaccttccattcttaacttccttcagctttaaatccttcaatgatttctca |
43247814 |
T |
|
| Q |
259 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttac |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| | |
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| T |
43247815 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttc |
43247914 |
T |
|
| Q |
359 |
ccat |
362 |
Q |
| |
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|||| |
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| T |
43247915 |
ccat |
43247918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 43233964 - 43234059
Alignment:
| Q |
100 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatatt |
195 |
Q |
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|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| |
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| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaactcctgtaacaagagattgaacaaagtcacccagtatt |
43234059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
59 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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