View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10253_low_8 (Length: 222)
Name: NF10253_low_8
Description: NF10253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10253_low_8 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3978055 - 3978276
Alignment:
| Q |
1 |
gccctgcagctggtgcttagaaagtctcgtgcttatggtggtcttgcacgaggtcttcatgaaggtgcaaaagtgattgagaagcatgctgcacagcttt |
100 |
Q |
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| T |
3978055 |
gccctgcagctggtgcttagaaagtctcgtgcttatggtggtcttgcacgaggtcttcatgaaggtgcaaaagtgattgagaagcatgctgcacagcttt |
3978154 |
T |
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| Q |
101 |
gtgttctagctgaagattgtgaccaacctgattatgtcaaattggtgaaagccctctgcacagagcacaatgttagcttgttgacagttccaagtgcaaa |
200 |
Q |
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| T |
3978155 |
gtgttctagctgaagattgtgaccaacctgattatgtcaaattggtgaaagccctctgcgcagagcacaatgttagcttgttgacagttccaagtgcaaa |
3978254 |
T |
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| Q |
201 |
gacacttggagagtgggctggt |
222 |
Q |
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| T |
3978255 |
gacacttggagagtgggctggt |
3978276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 39233698 - 39233495
Alignment:
| Q |
19 |
agaaagtctcgtgcttatggtggtcttgcacgaggtcttcatgaaggtgcaaaagtgattgagaagcatgctgcacagctttgtgttctagctgaagatt |
118 |
Q |
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| T |
39233698 |
agaaagtctcgtgcttatggtggacttgcacgcggtcttcatgaaagtgctaaagtgatcgagaagcatgctgcacagctctgtgttcttgctgaggatt |
39233599 |
T |
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| Q |
119 |
gtgaccaacctgattatgtcaaattggtgaaagccctctgcacagagcacaatgttagcttgttgacagttccaagtgcaaagacacttggagagtgggc |
218 |
Q |
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| T |
39233598 |
gtgaccaacctgattacgtcaagttggtgaaagccctttgtgctgaacacagcgtcagcttgttgactgttccaaatgcaaagacccttggagaatgggc |
39233499 |
T |
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| Q |
219 |
tggt |
222 |
Q |
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|||| |
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| T |
39233498 |
tggt |
39233495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 826889 - 827077
Alignment:
| Q |
34 |
tatggtggtcttgcacgaggtcttcatgaaggtgcaaaagtgattgagaagcatgctgcacagctttgtgttctagctgaagattgtgaccaacctgatt |
133 |
Q |
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||||||||||||||||| || || ||||||||||||||||| ||||||||| | | | ||||||||||||||| || |||||||||||||| ||||| | |
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| T |
826889 |
tatggtggtcttgcacgtggcctccatgaaggtgcaaaagtaattgagaagaacacaggacagctttgtgttcttgcagaagattgtgaccagcctgact |
826988 |
T |
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| Q |
134 |
atgtcaaattggtgaaagccctctgcacagagcacaatgttagcttgttgacagttccaagtgcaaagacacttggagagtgggctggt |
222 |
Q |
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| T |
826989 |
atgttaaacttgtcaaggctctttgtgctgagcacaatgttagtcttctgacagttcctagtgcgaagacacttggagaatgggctggt |
827077 |
T |
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