View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10254_high_1 (Length: 529)

Name: NF10254_high_1
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10254_high_1
NF10254_high_1
[»] chr6 (13 HSPs)
chr6 (28-519)||(26890735-26891226)
chr6 (327-518)||(27713769-27713960)
chr6 (372-505)||(26853961-26854094)
chr6 (416-503)||(26631760-26631847)
chr6 (416-503)||(26737735-26737822)
chr6 (384-501)||(27422277-27422394)
chr6 (405-505)||(27651942-27652041)
chr6 (426-518)||(26966390-26966482)
chr6 (431-519)||(31289542-31289630)
chr6 (333-387)||(27651844-27651898)
chr6 (317-390)||(26641217-26641290)
chr6 (317-390)||(26747183-26747256)
chr6 (321-390)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (327-518)||(17984-18175)
[»] chr8 (2 HSPs)
chr8 (327-521)||(29269635-29269829)
chr8 (38-96)||(12072659-12072717)
[»] scaffold0003 (1 HSPs)
scaffold0003 (384-501)||(64969-65086)
[»] chr4 (5 HSPs)
chr4 (183-257)||(5078646-5078720)
chr4 (316-398)||(18682705-18682787)
chr4 (348-398)||(18650319-18650369)
chr4 (349-398)||(18718539-18718588)
chr4 (320-364)||(18692037-18692081)
[»] chr2 (1 HSPs)
chr2 (342-398)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 28 - 519
Target Start/End: Complemental strand, 26891226 - 26890735
Alignment:
Q  28 acacataatccaacatgtcattcgggacactctcgggaaggaatctgtcgcgagaaatagtatttttcttaacataaacattcaattatgatatttgcat 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  26891226 acacataatccaacatgtcattcgggacactctcgggaaggaatctgtcgcgagaaatagcatttttcttaacacaaacattcaattatgatatttgcat 26891127  T
Q  128 ttctttctcttcccgaatacatatttacatgcacatatagcacattctgctagatttgtgatatttacacctaaaaccttacaattgaaacatcttccca 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891126 ttctttctcttcccgaatacatatttacatgcacatatagcacattctgctagatttgtgatatttacacctaaaaccttacaattgaaacatcttccca 26891027  T
Q  228 ccatatatgtcaatgaattgggacaccaaacagtcgagcctcgtgtgtccagggtgaaaaggcattcattcacatcatcataccagaaagagattgtgat 327  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26891026 ccatatatgtcaatgaattgggacaccaaacagtcgagcctcttgtgtccagggtgaaaaggcattcattcacattatcataccagaaagagattgtgat 26890927  T
Q  328 gaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctc 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26890926 gaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgtgttgctgctgctacataagttctgtctc 26890827  T
Q  428 agaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26890826 agaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 26890735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 27713769 - 27713960
Alignment:
Q  327 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 426  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 27713868  T
Q  427 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 518  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| |||||    
T  27713869 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 372 - 505
Target Start/End: Complemental strand, 26854094 - 26853961
Alignment:
Q  372 taaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataact 471  Q
    |||||| |||||||||||||||| |||| || ||||| ||||  |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  26854094 taaaaggaaattaatcatacatatatgtgtttctgctcctacgcaagttctgtctcagaaaactgacttggcagaaaattgtttttacacaagaataact 26853995  T
Q  472 tattaatcacaagagccattcggtgttgttgctg 505  Q
    ||||||||||||||||||| | ||||||||||||    
T  26853994 tattaatcacaagagccatacagtgttgttgctg 26853961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 503
Target Start/End: Complemental strand, 26631847 - 26631760
Alignment:
Q  416 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 503  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26631847 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26631760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 503
Target Start/End: Complemental strand, 26737822 - 26737735
Alignment:
Q  416 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 503  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26737822 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26737735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 384 - 501
Target Start/End: Original strand, 27422277 - 27422394
Alignment:
Q  384 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 483  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  27422277 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 27422376  T
Q  484 gagccattcggtgttgtt 501  Q
    ||||||| | ||||||||    
T  27422377 gagccatacagtgttgtt 27422394  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 405 - 505
Target Start/End: Original strand, 27651942 - 27652041
Alignment:
Q  405 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 504  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||  || | |||||||||||    
T  27651942 tgctgctaaacaagttctgtctca-aaaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgct 27652040  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 426 - 518
Target Start/End: Complemental strand, 26966482 - 26966390
Alignment:
Q  426 tcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 518  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| | || |||||||||  ||||| |||||    
T  26966482 tcagaaaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 431 - 519
Target Start/End: Complemental strand, 31289630 - 31289542
Alignment:
Q  431 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 519  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||||||||||    
T  31289630 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 27651844 - 27651898
Alignment:
Q  333 atctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatc 387  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaatc 27651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 26641290 - 26641217
Alignment:
Q  317 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 390  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26641290 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26641217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 26747256 - 26747183
Alignment:
Q  317 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 390  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26747256 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26747183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 26828784 - 26828715
Alignment:
Q  321 ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 390  Q
    |||||| |||| |||| ||| ||||||| ||||||||||| |||||| || |||| |||| |||||||||    
T  26828784 ttgtgaggaactatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata 26828715  T

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Target: scaffold0349 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 327 - 518
Target Start/End: Complemental strand, 18175 - 17984
Alignment:
Q  327 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 426  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 18076  T
Q  427 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 518  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| |||||    
T  18075 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

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Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 327 - 521
Target Start/End: Original strand, 29269635 - 29269829
Alignment:
Q  327 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 426  Q
    |||| |||| ||| |||||||||||| |||| ||||||||| | ||||||||||||||||||| ||||||| | ||| |||||||||| |||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaattaatcatgcatacatatgttgttgctgctacacaagttctgtct 29269734  T
Q  427 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctgct 521  Q
    | ||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||  ||||| ||||||||    
T  29269735 ctgaaaagtgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct 29269829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 12072717 - 12072659
Alignment:
Q  38 caacatgtcattcgggacactctcgggaaggaatctgtcgcgagaaatagtatttttct 96  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  12072717 caacatgtcattcgggtcactctcgggaaggaaactgtcgcgagaaatagcatttttct 12072659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 384 - 501
Target Start/End: Complemental strand, 65086 - 64969
Alignment:
Q  384 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 483  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  65086 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 64987  T
Q  484 gagccattcggtgttgtt 501  Q
    ||||||| | ||||||||    
T  64986 gagccatacagtgttgtt 64969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 5078720 - 5078646
Alignment:
Q  183 ttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaa 257  Q
    ||||||||||||||||||||| ||||||||||| |  ||||||||||||| | ||||||||||||||||||||||    
T  5078720 ttgtgatatttacacctaaaaacttacaattgagatgtcttcccaccatagaagtcaatgaattgggacaccaaa 5078646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 18682705 - 18682787
Alignment:
Q  316 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 398  Q
    ||||||||||| ||||||||| || |||| | |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18682705 agagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 18650319 - 18650369
Alignment:
Q  348 aatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 398  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18650369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 18718539 - 18718588
Alignment:
Q  349 atatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 398  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18718539 atatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18718588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  320 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 364  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 946412 - 946469
Alignment:
Q  342 tatcacaatatgtacaaactcttgta-ctcttaaaagcaaattaatcatacatacatg 398  Q
    ||||| |||||||||||||||||| | |||||||||||||  |||||| |||||||||    
T  946412 tatcaaaatatgtacaaactcttgcatctcttaaaagcaatctaatcacacatacatg 946469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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