View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10254_high_3 (Length: 422)
Name: NF10254_high_3
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10254_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 1374755 - 1374445
Alignment:
| Q |
17 |
catcaacggtataataaagattggaaaatgaaaagtaaatgggaatcatactgaaggtatgtaagccattgcaaacagtagaaggtaagaggcctgatat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1374755 |
catcaacggtataataaagattggaaaatgaaaagtaaatgggaatcatactgaaggtatgtaagccattgcaaacagtagaaggtaagaggcctgatat |
1374656 |
T |
|
| Q |
117 |
ttagcgtctgaagatgattttcagaccacgaatggctttgagactttttggaatgcaatagtaaaagtttgcctaataacctcataaaaacaatagataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1374655 |
ttagcgtctgaagatgattttcagaccacgaatggctttgagactttttggaatgcaatggtaaaagtttgcctaataacctcataaaaacaatagataa |
1374556 |
T |
|
| Q |
217 |
tattaatttgagaatcaatagaagtgccatttcatttatcaactcttatccatccatttgcattttaaaatccgaaaggtaaaactgaaaaacacagtac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1374555 |
tattaatttgagaatcaatagaagtgccatttcatttatcaactcttatccatccatttgcattttaaaatccgaaaggtaaaactgaaaaacacagtac |
1374456 |
T |
|
| Q |
317 |
tgacatttcctt |
328 |
Q |
| |
|
||||||||||| |
|
|
| T |
1374455 |
-gacatttcctt |
1374445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 1390866 - 1390772
Alignment:
| Q |
200 |
ataaaaacaatagataatattaatttgagaatcaatagaagtgccatttcatttatcaactcttatccatccatttgcattttaaaatccgaaag |
294 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| |||| |||| |||||||||| || |||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
1390866 |
ataaaaagaatagataatactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaag |
1390772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 1374396 - 1374351
Alignment:
| Q |
377 |
gttcctccaatggaagccaagagtgatttaacactcaaatttagta |
422 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1374396 |
gttcctccaatggtagccaagagtgatttaacactcaaatttagta |
1374351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 1351047 - 1350996
Alignment:
| Q |
243 |
ccatttcatttatcaactcttatccatccatttgcattttaaaatccgaaag |
294 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
1351047 |
ccatttcatttattaactcttatccatacatttgcattttgaaatccgaaag |
1350996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 1358943 - 1358870
Alignment:
| Q |
220 |
taatttgagaatcaatagaagtgccatttcatttatcaactcttatccatccatttgcattttaaaatccgaaag |
294 |
Q |
| |
|
|||||| ||||| |||| |||| ||||||||||||| ||||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
1358943 |
taatttcagaatgaataaaagtaccatttcatttattaactcttatccatacatttgca-tttgaaatccgaaag |
1358870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 1350938 - 1350893
Alignment:
| Q |
377 |
gttcctccaatggaagccaagagtgatttaacactcaaatttagta |
422 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1350938 |
gttcttccaatggcagctgagagtgatttaacactcaaatttagta |
1350893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University