View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10254_high_4 (Length: 315)
Name: NF10254_high_4
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10254_high_4 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 68 - 294
Target Start/End: Original strand, 41572399 - 41572625
Alignment:
| Q |
68 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
167 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41572399 |
taataaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacagcataccccagcctcaaacttgtttactgctaaaaccgct |
41572498 |
T |
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| Q |
168 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggcaaagaatacatctcct |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41572499 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggctaagaatacatctcca |
41572598 |
T |
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| Q |
268 |
cgatataaccttcacagcctccaccgt |
294 |
Q |
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| T |
41572599 |
cgatataaccttcacagcctccaccgt |
41572625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 27754102 - 27753877
Alignment:
| Q |
68 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
27754102 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacgggtcaccgcaatataaacagcataccccagcctcaaacttgtt-actgctaaaaccgct |
27754004 |
T |
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| Q |
168 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggcaaagaatacatctcct |
267 |
Q |
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| T |
27754003 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaacttcactcgtagaacaaacacgccggcaccttcaaacggctaagaaaccatctcca |
27753904 |
T |
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| Q |
268 |
cgatataaccttcacagcctccaccgt |
294 |
Q |
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| T |
27753903 |
cgacataaccttcacagcctccaccgt |
27753877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 294
Target Start/End: Original strand, 21941917 - 21942142
Alignment:
| Q |
69 |
aatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatata-cacaggataccccagcctcaaacttgtttactgctaaaaccgct |
167 |
Q |
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|||||||||||||||| | | ||||||||| |||||||| ||||||||||| || ||| | ||||||||||||||| ||||| |||| ||||| || |
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| T |
21941917 |
aatgaggctgccatataccatcctgcacaaa-ccagcacatgtcaccgcaatttaacacggcataccccagcctcaatcttgtag-ctgcgaaaactgca |
21942014 |
T |
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| Q |
168 |
gaacacctcctca-ttaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggc-aaagaatacatctc |
265 |
Q |
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|| | | | || |||| ||||||| || |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||| ||||| |||||| |
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| T |
21942015 |
gagaaacccgtccgttactgtaagagacatgcttttggattccaacaccactcgtagaacaaacacgtcggcatctttaaacggctcaagaa-ccatctc |
21942113 |
T |
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| Q |
266 |
ctcgatataaccttcacagcctccaccgt |
294 |
Q |
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| ||| || |||||||| ||||||||||| |
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| T |
21942114 |
cacgacattaccttcactgcctccaccgt |
21942142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 138728 - 138683
Alignment:
| Q |
201 |
ttggattccaactccactcgtagaacaaacacgccggcaccttcaa |
246 |
Q |
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| T |
138728 |
ttgggttccaactccactcgtaaaacaaacaagccggcacgttcaa |
138683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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