View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10254_low_1 (Length: 714)

Name: NF10254_low_1
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10254_low_1
NF10254_low_1
[»] chr8 (1 HSPs)
chr8 (19-694)||(42563418-42564088)


Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 19 - 694
Target Start/End: Complemental strand, 42564088 - 42563418
Alignment:
Q  19 aatggtggccttccaagacaggccagtagtagctctgatggtgggattgcttaaatggggtctaggaattcgctaactattcttcagtgttggtaacata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42564088 aatggtggccttccaagacaggccagtagtagctctgatggtgggattgcttaaatggggtctaggaattcgctaactattcttcagtgttggtaacata 42563989  T
Q  119 gtttattcttagcgggcatagattatcattgttgttcaaaaaggtatttatgatgcatttgttggggttctggggacatttctatcctgcttctacaccg 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  42563988 gtttattcttagcgggcatagattatcattgttgttcgaaaaggtatttacgatgcatttcttggggttctggggacatttctgtcctgcttctacaccg 42563889  T
Q  219 gcaaatttgaagagccagaacaaatgatggtgaaatttgctgtctagaacttccatgaaggtaatataacctgctaatgaatcaaattttcggtggagct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42563888 gcaaatttgaagagccagaacaaatgatggtgaaatttgctgtctagaacttccatgaaggtaatataacctgctaatgaatcaaattttcggtggagct 42563789  T
Q  319 cattcatatccttagctagatgtttttaagccgtgcatatgatgttgttgtaaagttggaacgaaatttctgttggtataattgaaatatcagaacatag 418  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42563788 ctttcatatccttagctagatgtttttaagccgtgcatatgatgttgttgtaaagttggaacgaaatttctgttggtataattgaaatatcagaacatag 42563689  T
Q  419 ttcaatgtatctgcctttgagaggaattcttgtctcttgacatttgaattgaaaggtggggccttttggttgggccttttgtaaacatcaccagacagct 518  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42563688 ttcaatgtatctgcctttgagaggaattcttgtcttttgacatttgaattgaaaggtggggccttttggttgggccttttgtaaacatcaccagacagct 42563589  T
Q  519 acattgtgaccattgaaaaaatttccactcttccacttgctctaaataatgcttcnnnnnnnnnnnnnnnnnnatgttgttgataaatctatattggtct 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||    
T  42563588 acattgtgaccattgaaaaaatttccactcttccacttgctctaaataatgcttctttttttgtttttgttttatgttgttgataaatctatattggtct 42563489  T
Q  619 cccttcnnnnnnnnnnnnnnnntctatattggtaagctgagggacgccgaaaaatctactattagtcctatgctac 694  Q
    ||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42563488 cccttc-----aaaaaaaaaaatctatattggtaagctgagggacgccgaaaaatctactattagtcctatgctac 42563418  T

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