View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10254_low_10 (Length: 331)
Name: NF10254_low_10
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10254_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 30834212 - 30833908
Alignment:
| Q |
17 |
aaaaggtggtattgtcacacagtccaaacaaccacaggttttgaacttcaaacctctaagggaagcactcaatgatccaggcgaatttcttcttagcgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30834212 |
aaaaggtggtattgtcacacagtccaaacaaccacaggttttgaacttcaaacctctaagggaagcactcaatgatccaggcgaatttcttcttagcgat |
30834113 |
T |
|
| Q |
117 |
ttttctaagtttgaccgcccacctctactgcatctagcattccaggctctggataagttcatttctgagataggccgcttccccgtcgctggttcagagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30834112 |
ttttctaagtttgaccgcccacctctactgcatctagcattccaggctctggataagttcatttctgagataggccgcttccccgtcgctggttcagagg |
30834013 |
T |
|
| Q |
217 |
aagatgcacataaattcatttctatcgccaataatattaatgggaacttgggtgatggaaggttggaagatgtgaatcccaagcttctgcagcaatttgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30834012 |
aagatgcacataaattcatttctatcgccaataatattaatgggaacttgggtgatggaaggttggaagatgtgaatcccaagcttctgcagcaatttgc |
30833913 |
T |
|
| Q |
317 |
ctttg |
321 |
Q |
| |
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||||| |
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| T |
30833912 |
ctttg |
30833908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 30815201 - 30814897
Alignment:
| Q |
17 |
aaaaggtggtattgtcacacagtccaaacaaccacaggttttgaacttcaaacctctaagggaagcactcaatgatccaggcgaatttcttcttagcgat |
116 |
Q |
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|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30815201 |
aaaaggtggtattgtcacacaggccaaacaaccaaaggttttgaacttcaaacctctaagggaagcactcaatgatccaggcgaatttcttcttagcgat |
30815102 |
T |
|
| Q |
117 |
ttttctaagtttgaccgcccacctctactgcatctagcattccaggctctggataagttcatttctgagataggccgcttccccgtcgctggttcagagg |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30815101 |
ttttctaagtttgaccgcccacctctactgcatctagcattccaggccctggataagttcatttcagagataggccgcttccccgtcgctggttcagagg |
30815002 |
T |
|
| Q |
217 |
aagatgcacataaattcatttctatcgccaataatattaatgggaacttgggtgatggaaggttggaagatgtgaatcccaagcttctgcagcaatttgc |
316 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30815001 |
aagatgcacataaattcatttctatcgccagtgatattaatgggaacttaggtgatggaaggttggaagatgtgaatcccaagcttctacagcaatttgc |
30814902 |
T |
|
| Q |
317 |
ctttg |
321 |
Q |
| |
|
||||| |
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| T |
30814901 |
ctttg |
30814897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 23552388 - 23552690
Alignment:
| Q |
17 |
aaaaggtggtattgtcacacagtccaaacaaccacaggttttgaacttcaaacctctaagggaagcactcaatgatccaggcgaatttcttcttagcgat |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
23552388 |
aaaaggtggtattgtcacacaggccaaacaaccacaggttttgaacttcaaacctctaagggaagcactcaatgatccaggcaaatttcttcttagcgat |
23552487 |
T |
|
| Q |
117 |
ttttctaagtttgaccgcccacctctactgcatctagcattccaggctctggataagttcatttctgagataggccgcttccccgtcgctggttcagagg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23552488 |
ttttctaagtttgaccgcccacctctactgcatctagcattccaggccttggataagttcatttctgagattggccgcttccccgtcgctggttcagagg |
23552587 |
T |
|
| Q |
217 |
aagatgcacataaattcatttctatcgccaataatattaatgggaacttgggtgatggaaggttggaagatgtgaatcccaagcttctgcagcaatttgc |
316 |
Q |
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|
||||||||| |||||||||||| ||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
23552588 |
aagatgcacgtaaattcatttcaatcgccagtaatattaatgggaacataggtgatggaaggttggaagatgtgaatcccaagcttctacggcaatttgc |
23552687 |
T |
|
| Q |
317 |
ctt |
319 |
Q |
| |
|
||| |
|
|
| T |
23552688 |
ctt |
23552690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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