View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10254_low_14 (Length: 284)
Name: NF10254_low_14
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10254_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 39849487 - 39849223
Alignment:
| Q |
1 |
aaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatataacatgtatg |
100 |
Q |
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| T |
39849487 |
aaatattcaatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatataacatgtaag |
39849388 |
T |
|
| Q |
101 |
tattgatgttcagcctacgctgtttgatacaaaatacacaagtgaatatacttatatatgcatcttctgagagggcgattttatgctagagtggtgagag |
200 |
Q |
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| T |
39849387 |
tattgatgttcagcctacgctgtttgatacaaaatacacaagtgaatatacttatatatgcatcttctgagagggcgattttatggtagagtggtgagag |
39849288 |
T |
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| Q |
201 |
taaacccttatcatacaggcaggcatacatgaattatcaaggttaaaagctttagcatgtcaaac |
265 |
Q |
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| T |
39849287 |
taaacccttatcatacaggcaggcatacatgaattatcaaggttaaaagctttaacatgtcaaac |
39849223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 3981488 - 3981351
Alignment:
| Q |
1 |
aaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatataacatgtatg |
100 |
Q |
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||||||| |||||||||||| || | |||||||||||||||||||| | |||||| ||||| || ||||| | |||| | ||| |||||||||| | |
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| T |
3981488 |
aaatattagatgcattgcatatggttaacaaataaaccaaccataagtagtctactgaagataagcaactccacataatataaaacacataacatgtaag |
3981389 |
T |
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| Q |
101 |
tattgatgttcagcctacgctgtttgatacaaaataca |
138 |
Q |
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| T |
3981388 |
tatttatcttcatcctacgttgtttgatacataataca |
3981351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 33973385 - 33973436
Alignment:
| Q |
87 |
atataacatgtatgtattgatgttcagcctacgctgtttgatacaaaataca |
138 |
Q |
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|||||||||||| ||||||||| ||||| ||||||||||||||| |||||| |
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| T |
33973385 |
atataacatgtaagtattgatgcgcagcccacgctgtttgatacataataca |
33973436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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