View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10254_low_15 (Length: 278)
Name: NF10254_low_15
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10254_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 45044811 - 45044668
Alignment:
| Q |
1 |
aaaaataaacagtacacacaggttttcaactcatttcaccccaaagttacaatacaaaggcgttnnnnnnnncatacc--tcagattctcctt-aattat |
97 |
Q |
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| T |
45044811 |
aaaaataaacagtacacatagattctcaactcatttcaccccaaagttacaa-----aggcgttaaaaaaaacatatcattcagattctcctttaattat |
45044717 |
T |
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| Q |
98 |
caatggattcctcctatcgtaacatggtatgtacgcaaaagatgctccc |
146 |
Q |
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| T |
45044716 |
caatgaattcctcctatcgtaacatggtatgtacgcaaacgatgctccc |
45044668 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 45044621 - 45044566
Alignment:
| Q |
193 |
gtgtatacttcaaaattatttgtgctaggttgagttcttatttatgtgcatatatg |
248 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45044621 |
gtgtatacctcaaaattatttgtgctaggttgagttcttatttatgtgcatatatg |
45044566 |
T |
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