View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10254_low_19 (Length: 218)

Name: NF10254_low_19
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10254_low_19
NF10254_low_19
[»] chr7 (11 HSPs)
chr7 (1-203)||(4863735-4863937)
chr7 (1-152)||(4672540-4672691)
chr7 (3-152)||(4630791-4630940)
chr7 (3-152)||(4643535-4643684)
chr7 (4-176)||(4783918-4784090)
chr7 (3-166)||(4697272-4697435)
chr7 (68-146)||(4653390-4653468)
chr7 (3-96)||(4636777-4636870)
chr7 (43-176)||(4816386-4816519)
chr7 (77-152)||(4712231-4712306)
chr7 (77-174)||(4846171-4846268)
[»] chr4 (1 HSPs)
chr4 (4-152)||(18925825-18925973)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 4863937 - 4863735
Alignment:
Q  1 gcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863937 gcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactg 4863838  T
Q  101 tgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863837 tgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtga 4863738  T
Q  201 tgt 203  Q
    |||    
T  4863737 tgt 4863735  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 4672691 - 4672540
Alignment:
Q  1 gcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactg 100  Q
    |||||||||||||| |||| ||| | | ||||||||||||  |||||||| ||| | ||||| ||| ||||||||||||||||||||||||||||| |||    
T  4672691 gcctttcagatttttatagctaacactctggctgaggaaagagctgatgttataagttggagtggtgctcgtatggttcctgttcataaggattatgctg 4672592  T
Q  101 tgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttc 152  Q
    |  ||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  4672591 tcactatgtactctcaagaaggaagctctcaaattgaaagagttaatctttc 4672540  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 4630940 - 4630791
Alignment:
Q  3 ctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgtg 102  Q
    ||||||||||||||||| ||| | | | ||||||||||| |||||||||||| ||||||| ||| ||||||||||||||  |||||||||||||  ||||    
T  4630940 ctttcagattttcatagctaacattctagctgaggaaaaagctgatgtgataaggtggagtggtgctcgtatggttcctactcataaggattatgttgtg 4630841  T
Q  103 tctataaactctgaagaaggaagctctcaaattgaaagagttaacctttc 152  Q
      |||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  4630840 cttatgtactctcaagaaggaagctctcaaattgaaagagttaatctttc 4630791  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 4643684 - 4643535
Alignment:
Q  3 ctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgtg 102  Q
    ||||||||| ||||||| ||| | | ||| ||| ||||| || ||||||||| ||||||| ||| ||||| ||||||||||||||||||||||| |  ||    
T  4643684 ctttcagatattcatagataacactttggttgaagaaaaggcggatgtgatagggtggagtggtgctcgtttggttcctgttcataaggattatgcaatg 4643585  T
Q  103 tctataaactctgaagaaggaagctctcaaattgaaagagttaacctttc 152  Q
    |||||  ||| | ||||||||||||||||| ||||||||| ||| |||||    
T  4643584 tctatggactatcaagaaggaagctctcaacttgaaagagctaatctttc 4643535  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 4783918 - 4784090
Alignment:
Q  4 tttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgtgt 103  Q
    |||||||||||||||| | ||||| |||||||  |    |||||||||||| ||||||| ||| ||| | ||||||||||||||||||||||| | |||     
T  4783918 tttcagattttcatagatgatagtttggctgaacatgctgctgatgtgataaggtggagtggtgctcctttggttcctgttcataaggattatgccgtga 4784017  T
Q  104 ctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaa 176  Q
    ||||    ||| |||  ||||||||||||||||||| |||||| |||||| ||||| |||||| |||||||||    
T  4784018 ctatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaa 4784090  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 4697272 - 4697435
Alignment:
Q  3 ctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgtg 102  Q
    |||||| || ||||||| ||||| | |||| |||  |||||||||||||||    |||||   | ||| |||||||||||||||||| |||||| |||||    
T  4697272 ctttcaaatattcatagctaatactttggcggagataaacgctgatgtgatttcttggagtactactcctatggttcctgttcataaagattatgctgtg 4697371  T
Q  103 tctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaac 166  Q
    |||||  ||||| |||||||||||||||||||||||||| |||| |||||  ||||| ||||||    
T  4697372 tctatgcactctcaagaaggaagctctcaaattgaaagacttaatctttcaatcaagctacaac 4697435  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 4653468 - 4653390
Alignment:
Q  68 ctcgtatggttcctgttcataaggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaa 146  Q
    ||||| || ||||||||||||||||||||  |||| ||||  ||||||||||||||||| |||||||||||||||||||    
T  4653468 ctcgtttgattcctgttcataaggattatgttgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaa 4653390  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 4636870 - 4636777
Alignment:
Q  3 ctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattat 96  Q
    ||||||||| ||||||| ||| | | ||| ||| ||||| || ||||||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  4636870 ctttcagatattcatagataacactttggttgaagaaaaggcggatgtgatagggtggagtggtgctcgtatggttcctgttcataaggattat 4636777  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 4816386 - 4816519
Alignment:
Q  43 gctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagag 142  Q
    |||||||||||| ||||||| ||| ||| | | ||||||||||||||||||||| | ||| ||||    ||| | |  ||||||||||||||||||| ||    
T  4816386 gctgatgtgatatggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcatggcggaagctctcaaattgaaaaag 4816485  T
Q  143 ttaacctttcgctcaagttacaacaattaccaaa 176  Q
    |||| |||||| ||||| |||| | |||||||||    
T  4816486 ttaatctttcgatcaagctacatcgattaccaaa 4816519  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 4712231 - 4712306
Alignment:
Q  77 ttcctgttcataaggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttc 152  Q
    |||||||||||||||||||| |||||   ||  ||||| || | ||||||||| ||||||||||||||||||||||    
T  4712231 ttcctgttcataaggattatgctgtgaaaatgtactctcaaaatggaagctctgaaattgaaagagttaacctttc 4712306  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 4846171 - 4846268
Alignment:
Q  77 ttcctgttcataaggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattacca 174  Q
    |||||||||||||||||||| |||||   ||  ||||| || | ||||||||| |||||||||||||||| |||||  ||||| | |||| |||||||    
T  4846171 ttcctgttcataaggattatgctgtgaaaatctactctcaaaatggaagctctgaaattgaaagagttaatctttcaatcaagcttcaacgattacca 4846268  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 18925825 - 18925973
Alignment:
Q  4 tttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgtgt 103  Q
    ||||||||||| |||| | ||| | |||||||   ||| ||||||||||| |  ||||| ||| |||||||||||||||||||||||||||||  ||||     
T  18925825 tttcagatttttatagatgataatttggctgaacgaaatgctgatgtgattcattggagtggtgctcgtatggttcctgttcataaggattatgttgtga 18925924  T
Q  104 ctataaactctgaagaaggaagctctcaaattgaaagagttaacctttc 152  Q
    ||||  |||||  |||||||||||| |||||| |||||||||| |||||    
T  18925925 ctatgtactctcgagaaggaagctcgcaaattaaaagagttaatctttc 18925973  T

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