View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10254_low_2 (Length: 620)
Name: NF10254_low_2
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10254_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 18 - 614
Target Start/End: Complemental strand, 34777051 - 34776461
Alignment:
| Q |
18 |
acttcaggatcaaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777051 |
acttcaggatcaaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccat |
34776952 |
T |
|
| Q |
118 |
tcttgctttgttctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34776951 |
tcttgctttgttctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccccggtcatcacttgtttcatcaa |
34776852 |
T |
|
| Q |
218 |
ttgatatgtcaatgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776851 |
ttgatatgtcaatgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatc |
34776752 |
T |
|
| Q |
318 |
atgcagaacccactgtgataaaagacaattgacatttaatttacttatttggttaatccaaaatatgcatcttaatttgttactagttactaccatttta |
417 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
34776751 |
atgcagaacccactatgataaaagacaattgacatttaatttagttatttggttaatccaaaata------ttaatttattactagttactaccatttta |
34776658 |
T |
|
| Q |
418 |
tccttattagcaaaagttatgtaacacagacacttcagattgaaggtaatgtatcctacacattttaatgtctaacattatctcaacatggacacatgtt |
517 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34776657 |
tccttattagcaaaagttatgtagcagagacacttcggattgaaagtaatgtatcctacacattttaatgtctaacattatctcaacacggacacatgtt |
34776558 |
T |
|
| Q |
518 |
aataaattgaaacaatttcattgactaaatttaattctggtgtctgtgtcattgtcaatattgtatccggtgtgtgcagtgtcagtgtctctgcttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
34776557 |
aataaattgaaacaatttcattgactaaatttaattctggtgtctgtgtcattgtcaatattgtgtccggtgtgtgcagtgtcagtgtctgtgcttc |
34776461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 29 - 331
Target Start/End: Complemental strand, 34785206 - 34784904
Alignment:
| Q |
29 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
128 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34785206 |
aaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
34785107 |
T |
|
| Q |
129 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
228 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
34785106 |
tctttctttaccaaggaacattgtaagcatcaccaaatcatattccaattgcaactcagttaatctacgatcatcacttgtttcatcaattgatatgtca |
34785007 |
T |
|
| Q |
229 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
328 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
34785006 |
atgataatcacttttccatctttccctttatgtgaaatagcttctttgctgttcttcaatatctttaaggataattcatcattccagtcatgcaaaaccc |
34784907 |
T |
|
| Q |
329 |
act |
331 |
Q |
| |
|
||| |
|
|
| T |
34784906 |
act |
34784904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 29 - 335
Target Start/End: Original strand, 11467270 - 11467576
Alignment:
| Q |
29 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
128 |
Q |
| |
|
||||||||||||| || || |||||||||||| | || || ||||| |||||||| || ||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
11467270 |
aaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattctttcttttc |
11467369 |
T |
|
| Q |
129 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
228 |
Q |
| |
|
||||||||| ||| | | || | ||| |||| ||| ||| |||||| ||||| ||||| | || || |||||||||||||||||||||||||| |
|
|
| T |
11467370 |
tctttcttttccattatgtagagtcatcattaccatgtcaaagtgcaattgtaactcggttaactcacgatcttcacttgtttcatcaattgatatgtct |
11467469 |
T |
|
| Q |
229 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
328 |
Q |
| |
|
||||| || | ||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
11467470 |
atgattattatctttcctttttttccttttcctgaaatagcttctttgctgttattcaatatctttaaggagagttcatcatcccaatcatgcaaaaccc |
11467569 |
T |
|
| Q |
329 |
actgtga |
335 |
Q |
| |
|
||||||| |
|
|
| T |
11467570 |
actgtga |
11467576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 29 - 335
Target Start/End: Complemental strand, 11524603 - 11524297
Alignment:
| Q |
29 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
128 |
Q |
| |
|
||||||||||||| || || |||||||||||| | || || ||||| ||||||||||| || || || ||||| |||||||| | |||||||| |||| |
|
|
| T |
11524603 |
aaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctttcttttc |
11524504 |
T |
|
| Q |
129 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
228 |
Q |
| |
|
||||||||| ||| | || || | ||| |||| ||| ||| |||||||||||| |||||| | | ||||||||||||||||||||||||| ||| |
|
|
| T |
11524503 |
tctttcttttccattatgcagagtcatcattaccatgtcaaagtgcaattgcaactcggttaattcatgatcatcacttgtttcatcaattgatacgtct |
11524404 |
T |
|
| Q |
229 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
328 |
Q |
| |
|
||||| || | ||||| | || ||||| ||||||||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
11524403 |
atgattattatctttccttttttcccttttcctgaaatagcttctttgcagttcttcaatatccttagggagagttcatcatcccaatcatgcagaaccc |
11524304 |
T |
|
| Q |
329 |
actgtga |
335 |
Q |
| |
|
||||||| |
|
|
| T |
11524303 |
actgtga |
11524297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 31 - 332
Target Start/End: Complemental strand, 11508386 - 11508085
Alignment:
| Q |
31 |
ggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttc |
130 |
Q |
| |
|
||||| ||||||||||| |||||||| || | || || ||||| || |||||||| |||||||| || |||||||||| |||||||||| ||| || |
|
|
| T |
11508386 |
ggatatacttcgatgagagacttgaaaccgcatataggtgtaatcttatagctgctgaaacctgcgtcgaatatgagtttctcccattctttcttctctc |
11508287 |
T |
|
| Q |
131 |
tttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtcaat |
230 |
Q |
| |
|
||||||| ||| |||| || | ||||| || ||| ||||||||| ||||||| || | | | | ||||||||||||||||||||||||||||| |
|
|
| T |
11508286 |
tttcttttccatttaacaaagtcatcatcatgaagtcaaagtccaatttcaactcatttgtttcatgattgtcacttgtttcatcaattgatatgtcaat |
11508187 |
T |
|
| Q |
231 |
gataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaacccac |
330 |
Q |
| |
|
||| ||||| ||||| || ||||| |||||||||| ||||| |||||||||||||||||| || | |||||||||||||||||||||| |||| |
|
|
| T |
11508186 |
gattatcacctttcccgttttcccttttcctgaaatagctgttttgcagttcttcaatatctttaaagagagatcatcattccaatcatgcagaatccac |
11508087 |
T |
|
| Q |
331 |
tg |
332 |
Q |
| |
|
|| |
|
|
| T |
11508086 |
tg |
11508085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 29 - 333
Target Start/End: Complemental strand, 11548730 - 11548426
Alignment:
| Q |
29 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || || ||||| || |||||||| || ||||| || ||| ||||| |||||||||| ||| |
|
|
| T |
11548730 |
aaggataaacttcgatgatagacttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattctttcttctc |
11548631 |
T |
|
| Q |
129 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
228 |
Q |
| |
|
||||||||| ||| |||| || | ||||| |||||| ||||||||| ||||||| || | | | | ||||||||||| ||||||||||||||| |
|
|
| T |
11548630 |
tctttcttttccatttaacaaagtcatcatcatgaaatcaaagtccaatttcaactcatttgtttcatgattgtcacttgtttcgtcaattgatatgtca |
11548531 |
T |
|
| Q |
229 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
328 |
Q |
| |
|
||||| ||||| ||||| | || ||||| ||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||| || || |
|
|
| T |
11548530 |
atgattatcacctttccttttttcccttttcctgaaatagcttttttgcaattctccaatatctttaaggacaattcatcattccaatcatgcaaaatcc |
11548431 |
T |
|
| Q |
329 |
actgt |
333 |
Q |
| |
|
||||| |
|
|
| T |
11548430 |
actgt |
11548426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 333
Target Start/End: Original strand, 11444378 - 11444682
Alignment:
| Q |
29 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || || ||||| || |||||||| || ||||| || ||| ||||| |||||||||| ||| |
|
|
| T |
11444378 |
aaggataaacttcgatgatagacttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattctttcttctc |
11444477 |
T |
|
| Q |
129 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
228 |
Q |
| |
|
||||||||| ||| |||| || | ||||| |||||| ||||||||| ||||||| || | | | | ||||||||||||||||||||||||||| |
|
|
| T |
11444478 |
tctttcttttccatttaacaaagtcatcatcatgaaatcaaagtccaatttcaactcatttgtttcatgattgtcacttgtttcatcaattgatatgtca |
11444577 |
T |
|
| Q |
229 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
328 |
Q |
| |
|
||||| ||||| ||||| | || ||||| ||||||||||| ||||| |||| |||||||||||||| ||| |||||||||||||||| || || |
|
|
| T |
11444578 |
atgattatcacctttccttttttcccttttcctgaaatagcttttttgcaattctctaatatctttaaggacaattcgtcattccaatcatgcaaaatcc |
11444677 |
T |
|
| Q |
329 |
actgt |
333 |
Q |
| |
|
||||| |
|
|
| T |
11444678 |
actgt |
11444682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 233
Target Start/End: Complemental strand, 11487927 - 11487725
Alignment:
| Q |
31 |
ggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttc |
130 |
Q |
| |
|
||||||||||| |||||||||||||||||| | || || ||||| ||||||||||| || || || ||||| |||||||| | |||||||| |||| || |
|
|
| T |
11487927 |
ggataaacttctatgagtgacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctttcttttctc |
11487828 |
T |
|
| Q |
131 |
tttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtcaat |
230 |
Q |
| |
|
||||||| ||| | || || | ||| |||| ||| ||| |||||||||||| |||||| | | ||||||||||||||||||||||||| ||| || |
|
|
| T |
11487827 |
tttcttttccattatgcagagtcatcattaccatgtcaaagtgcaattgcaactcggttaattcatgatcatcacttgtttcatcaattgatacgtctat |
11487728 |
T |
|
| Q |
231 |
gat |
233 |
Q |
| |
|
||| |
|
|
| T |
11487727 |
gat |
11487725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 11441502 - 11441659
Alignment:
| Q |
29 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
128 |
Q |
| |
|
|||||||||||||||||| || |||||||| | || || ||||| || |||||||| || ||||| || |||||||||| |||||||||| ||| |
|
|
| T |
11441502 |
aaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctttcttctc |
11441601 |
T |
|
| Q |
129 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactca |
186 |
Q |
| |
|
||||||||| ||| |||| || | ||||| |||||| ||||||||| ||||||| |
|
|
| T |
11441602 |
tctttcttttccatttaacaaagtcatcatcatgaaatcaaagtccaatttcaactca |
11441659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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