View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10254_low_5 (Length: 433)

Name: NF10254_low_5
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10254_low_5
NF10254_low_5
[»] chr8 (5 HSPs)
chr8 (19-427)||(14004103-14004505)
chr8 (19-427)||(5766293-5766701)
chr8 (89-215)||(34935748-34935874)
chr8 (286-387)||(17635611-17635712)
chr8 (286-387)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (61-346)||(1481684-1481963)
chr4 (289-413)||(8186317-8186441)
chr4 (298-390)||(661855-661947)
chr4 (290-390)||(55907634-55907734)
[»] chr6 (4 HSPs)
chr6 (286-369)||(7132323-7132406)
chr6 (286-369)||(7135246-7135329)
chr6 (286-369)||(7138169-7138252)
chr6 (286-390)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (290-390)||(1036570-1036670)
[»] chr1 (2 HSPs)
chr1 (194-227)||(30827961-30827994)
chr1 (305-389)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 14004505 - 14004103
Alignment:
Q  19 gatatatgggaacgtgtgttcagattgctgaaaaataacgacgatgatgaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  14004505 gatatatgggaacgtgtgttcagattgctgaaaaataacgacgatgatgaccaccg------ctatttgaagtctctatctgtcgcctcaaaacacttcc 14004412  T
Q  119 tctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccct 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004411 tctccgtcaccaaccgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccct 14004312  T
Q  219 cgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14004311 cgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaaccc 14004212  T
Q  319 atccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatgtcc 418  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14004211 atccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctcc 14004112  T
Q  419 atctcattg 427  Q
    |||||||||    
T  14004111 atctcattg 14004103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 5766293 - 5766701
Alignment:
Q  19 gatatatgggaacgtgtgttcagattgctgaaaaataacgacgatgatgaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5766293 gatatatgggaacgtgtgttcagattgctgaaaaataacgacgatgatgaccaccgtaagcggtatttgaagtctctatctgtcgcctcaaaacacttcc 5766392  T
Q  119 tctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccct 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766393 tctccgtcaccaaccgtcacaaattctgtctaactatcttgtatccagccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccct 5766492  T
Q  219 cgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactc 318  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5766493 cgacctctcgtactattacggtgacctagatgcacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctcaatctttccaaccaactc 5766592  T
Q  319 atccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatgtcc 418  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  5766593 atccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagcactgatatcc 5766692  T
Q  419 atctcattg 427  Q
    | |||||||    
T  5766693 acctcattg 5766701  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 34935748 - 34935874
Alignment:
Q  89 agtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcct 188  Q
    ||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||| ||| ||||| |   ||| |||||| |||  ||| ||| ||||    
T  34935748 agtctctctctgtctcctccaaacacttcctctccgtcaccaaccgtcacaaattctctctcactatttctgatcaaaccctcccttcccttcctcgcct 34935847  T
Q  189 attacaaaggttcaccaaactcacctc 215  Q
     || |||||||| ||||| ||||||||    
T  34935848 cttccaaaggtttaccaacctcacctc 34935874  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 387
Target Start/End: Original strand, 17635611 - 17635712
Alignment:
Q  286 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 385  Q
    ||||||| ||| |||||||| ||||||||||||| | ||||  ||||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||    
T  17635611 aaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T
Q  386 cc 387  Q
    ||    
T  17635711 cc 17635712  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 387
Target Start/End: Original strand, 17642890 - 17642991
Alignment:
Q  286 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 385  Q
    ||||||||||| |||||||| |||||||| |||| | ||||  | ||||| || | ||||||||| | ||| ||||||||||||||||| || | |||||    
T  17642890 aaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgtt 17642989  T
Q  386 cc 387  Q
    ||    
T  17642990 cc 17642991  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 61 - 346
Target Start/End: Complemental strand, 1481963 - 1481684
Alignment:
Q  61 gatgatgaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatcttgt 160  Q
    ||||| |||||||| || |||||  |||||||||| || ||||| ||||||||||||||||||||||||||| || ||||||||| ||| ||||||| |     
T  1481963 gatgacgaccaccggaaacgctacatgaagtctctctcagtcgcttcaaaacacttcctctccgtcaccaacagttacaaattctctctcactatctggc 1481864  T
Q  161 atccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttac 260  Q
    || |||||   | |  ||| ||  ||||  |||||||||||||||| ||||||||  | ||||| || | ||| ||   | |||||||||| ||||| ||    
T  1481863 attcaacc---cgttaccttccacgcctcctacaaaggttcaccaatctcacctcttttgacctttccttctactactttaacctcgatgcgcttctcac 1481767  T
Q  261 tcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctt 346  Q
     ||||||||  | ||||||   || |||||||||||||||||| | || |||||||||| |||||| |||||||| ||||||||||    
T  1481766 ccaaatctcctgtttccca---ttgaaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagctt 1481684  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 413
Target Start/End: Original strand, 8186317 - 8186441
Alignment:
Q  289 ctcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttcca 388  Q
    |||||||| |||||||| || ||| ||| || | ||||||| ||||| ||||||| | |||| || || |||||||||||||||||||| |  |||||||    
T  8186317 ctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttcca 8186416  T
Q  389 accttaattctcttaatagcactga 413  Q
    || || | ||| | |||||||||||    
T  8186417 acattgaatctatcaatagcactga 8186441  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 661947 - 661855
Alignment:
Q  298 ctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaac 390  Q
    |||||||| |||||||||  || | |||| ||||||||||||||||||||||| |   | ||||||||||| ||||| || ||||||| ||||    
T  661947 ctcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttacaac 661855  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 390
Target Start/End: Original strand, 55907634 - 55907734
Alignment:
Q  290 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 389  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||  || || |||||||||||    
T  55907634 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T
Q  390 c 390  Q
    |    
T  55907734 c 55907734  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 7132406 - 7132323
Alignment:
Q  286 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 369  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7132406 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 7135329 - 7135246
Alignment:
Q  286 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 369  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7135329 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 7138252 - 7138169
Alignment:
Q  286 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 369  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7138252 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 390
Target Start/End: Original strand, 8913375 - 8913479
Alignment:
Q  286 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 385  Q
    |||||||||||||||||| | |||||||||   | | ||||||||||||| |||| || ||| |||   || ||||||||||||||||| || | |||||    
T  8913375 aaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T
Q  386 ccaac 390  Q
    |||||    
T  8913475 ccaac 8913479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 390
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
Q  290 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 389  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||| || || |||||||||||    
T  1036570 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T
Q  390 c 390  Q
    |    
T  1036670 c 1036670  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 30827994 - 30827961
Alignment:
Q  194 aaaggttcaccaaactcacctccctcgacctctc 227  Q
    ||||||||||||| ||||||||||||||||||||    
T  30827994 aaaggttcaccaatctcacctccctcgacctctc 30827961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 7555280 - 7555196
Alignment:
Q  305 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 389  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| |  || ||||||||||| |||||||| | |||||||||    
T  7555280 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

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