View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10254_low_7 (Length: 383)
Name: NF10254_low_7
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10254_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 41928950 - 41928592
Alignment:
| Q |
7 |
gaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41928950 |
gaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatattgagcatagtcatcaaagcccaatttttgcat |
41928851 |
T |
|
| Q |
107 |
agtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatggttagcctcagcggtaacaaagctaatgaattcagctgcatat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41928850 |
agtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatggttagcctcagcggtaacaaagctaataaattcagctgcatat |
41928751 |
T |
|
| Q |
207 |
ttcaccataatttccttgctttcatcggttatctttgcatgtcttggtagagcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41928750 |
ttcaccataatttccttgctttcatcggttatctttgcatgtcttggtagagcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaa |
41928651 |
T |
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| Q |
307 |
attcttcttgcaccctcgaatcagctggttgcactccatcctctaacatcaccacaata |
365 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41928650 |
attcttcttgcaccctcgaactagctggttgcactccatcctctaacatcaccacaata |
41928592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 41938180 - 41938037
Alignment:
| Q |
7 |
gaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41938180 |
gaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaataccgagcatagtcatcaaagcccaatttttgcat |
41938081 |
T |
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| Q |
107 |
agtagctaacaaatcttcagcagtaattgttgttctacaatcta |
150 |
Q |
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| T |
41938080 |
agtagctaacaaatcttcagcagtaattgttgttctacaatcta |
41938037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 41911210 - 41910977
Alignment:
| Q |
7 |
gaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcat |
106 |
Q |
| |
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||||||||||||| ||||||| ||| ||||||| ||| | |||||||||||||||||||| |||| || ||||||| ||||||| |||||||||||||| |
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| T |
41911210 |
gaggtgggggagcgtattgacttacgcgagcacgatggcaaaaaagttggatgtagcggagggaacacgcagcatagacatcaaaacccaatttttgcat |
41911111 |
T |
|
| Q |
107 |
agtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatgg--ttagcctcagcggtaacaaagctaatgaattcagctgcat |
204 |
Q |
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| || ||||||||||||||||||||||||||| ||| ||||||| |||||||||||| || | |||||| ||||||||||||||||||||||||| |
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| T |
41911110 |
actaattaacaaatcttcagcagtaattgttgtcctataatctaaattgcaataatggttttggtctcagcagtaacaaagctaatgaattcagctg--- |
41911014 |
T |
|
| Q |
205 |
atttcaccataatttccttgctttcatcggttatcttt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41911013 |
-gttcaccataatttccttgctttcatcggttatcttt |
41910977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 226 - 365
Target Start/End: Complemental strand, 41910792 - 41910653
Alignment:
| Q |
226 |
tttcatcggttatctttgcatgtcttggtagagcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcga |
325 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41910792 |
tttcatcggttatctttgcatgttgaggaagagcttttttcatcaatctatgcacattggcaatgggaaaggctcttgaaaattcttcatgcaccctcga |
41910693 |
T |
|
| Q |
326 |
atcagctggttgcactccatcctctaacatcaccacaata |
365 |
Q |
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| T |
41910692 |
actagctggttgcactccatcctctaacatcaccacaata |
41910653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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