View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10254_low_8 (Length: 383)
Name: NF10254_low_8
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10254_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 34865230 - 34865584
Alignment:
| Q |
17 |
agttacaacatctaagtgacgaagtttgccagatttcgatttttcaacctttatgatccaccctttattagaagaactagttggcaataatggttgtagg |
116 |
Q |
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| T |
34865230 |
agttacaacatctaagtgacgaagtttgccagatttcgatttttcaacctttatgatccaccctttattagaagaactagttggaaataatggttgtagg |
34865329 |
T |
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| Q |
117 |
cgaaatattttggtttcggtgaatagcaaaaacttaccatctggaatgcgaagtgtgtgagaaggagaagaaaaaggagggggaagaatagagcgcaata |
216 |
Q |
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| T |
34865330 |
cgaaatattttggtttcggtgaaaagcaaaaacttaccatctggaatgcgaagtgtatgagaaggagaaggaaaaggagggggaagaatagagcgcaata |
34865429 |
T |
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| Q |
217 |
aagcacagacactacggaatcgaagaacatcaaatggattcaaattcatggatataataactaaccataattctcgaggaagatttagccagtcaactgc |
316 |
Q |
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| T |
34865430 |
aagcacagacactacggaatcgaagaacatcaaatggattcaaattcttggatataataactaaccataattctcgaggaagatttagccagtcaactgc |
34865529 |
T |
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| Q |
317 |
gtcatcatccatcatcacacactttttcttcaagtctccgtcaccagtctctgct |
371 |
Q |
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| T |
34865530 |
gtcatcatccatcatcacacactttttcttcaagtctccgtcaccagtccctgct |
34865584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 95 - 356
Target Start/End: Complemental strand, 51858220 - 51857986
Alignment:
| Q |
95 |
agttggcaataatggttgtaggcgaaatattttggtttcggtgaatagcaaaaacttaccatctggaatgcgaagtgtgtgagaaggagaagaaaaagga |
194 |
Q |
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| T |
51858220 |
agttggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatga------------aaagga |
51858133 |
T |
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| Q |
195 |
gggggaagaatagagcgcaataaagcacagacactacggaatcgaagaacatcaaatggattcaaattcatggatataataactaaccataattctcgag |
294 |
Q |
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|||| ||||||||||||| ||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||| ||||||| |
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| T |
51858132 |
ggggaaagaatagagcgccataaagcacaggcactacggaatcgaa-------------atttttttt--tggatataataactaaccataagtctcgag |
51858048 |
T |
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| Q |
295 |
gaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccg |
356 |
Q |
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| T |
51858047 |
gaagatttagccaatcaaccgtgtcatcatctatcatcacacacactttcttcaagtctccg |
51857986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 250
Target Start/End: Original strand, 9518423 - 9518636
Alignment:
| Q |
37 |
gaagtttgccagatttcgatttttcaacctttatgatccaccctttattagaagaactagttggcaataatggttgtaggcgaaatattttggt--ttcg |
134 |
Q |
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| T |
9518423 |
gaagtttgccggattttgtttcttcaatctttatgatccaccctttattaaaataattagttgatactaatggttctaggcgatatactttattagtttg |
9518522 |
T |
|
| Q |
135 |
gtgaatagcaaaaacttaccatctggaatgcgaagtgtgtgagaaggagaagaaaaaggagggggaagaatagagcgcaataaagcacagacactacgga |
234 |
Q |
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| T |
9518523 |
gaga--aggaaaaatttacagtgtggaatacgaagtgtgtgagaggaagatggaaaaggagggggaataatagagcgccacaaaggacaaacacctcgaa |
9518620 |
T |
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| Q |
235 |
atcgaagaacatcaaa |
250 |
Q |
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| T |
9518621 |
atctaataacatcaaa |
9518636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 34145375 - 34145310
Alignment:
| Q |
24 |
acatctaagtgacgaagtttgccagatttcgatttttcaacctttatgatccaccctttattagaa |
89 |
Q |
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| T |
34145375 |
acatctaagtgacgaaattttccagattttgattcttcaacctttatgatccaccctatattagaa |
34145310 |
T |
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