View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10254_low_9 (Length: 351)

Name: NF10254_low_9
Description: NF10254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10254_low_9
NF10254_low_9
[»] chr1 (55 HSPs)
chr1 (1-333)||(37055622-37055953)
chr1 (14-88)||(41877480-41877554)
chr1 (6-101)||(6612168-6612263)
chr1 (1-80)||(17754273-17754352)
chr1 (19-85)||(27471579-27471645)
chr1 (12-88)||(14359532-14359607)
chr1 (12-88)||(48450597-48450673)
chr1 (12-83)||(398780-398851)
chr1 (12-83)||(5898281-5898352)
chr1 (8-83)||(34257925-34258000)
chr1 (12-101)||(15323136-15323225)
chr1 (12-81)||(20157367-20157436)
chr1 (19-88)||(46348393-46348462)
chr1 (25-101)||(9629897-9629973)
chr1 (19-83)||(36878441-36878505)
chr1 (19-90)||(18556464-18556535)
chr1 (13-88)||(21378552-21378627)
chr1 (45-88)||(22515897-22515940)
chr1 (25-88)||(22881626-22881689)
chr1 (25-88)||(31672905-31672968)
chr1 (46-88)||(18190118-18190160)
chr1 (26-88)||(38078671-38078733)
chr1 (13-83)||(38503294-38503364)
chr1 (12-101)||(5376497-5376586)
chr1 (14-83)||(34298411-34298480)
chr1 (45-106)||(34712375-34712436)
chr1 (8-101)||(5944250-5944345)
chr1 (45-88)||(113305-113348)
chr1 (42-77)||(2851024-2851059)
chr1 (20-79)||(2896140-2896199)
chr1 (25-88)||(3490400-3490463)
chr1 (46-101)||(6332678-6332732)
chr1 (2-101)||(7918208-7918307)
chr1 (46-101)||(24577183-24577238)
chr1 (45-88)||(31015049-31015092)
chr1 (65-147)||(2218265-2218347)
chr1 (12-94)||(5927344-5927426)
chr1 (15-77)||(16812519-16812581)
chr1 (41-83)||(23804430-23804472)
chr1 (8-102)||(25272451-25272545)
chr1 (46-88)||(32461473-32461515)
chr1 (45-106)||(1486701-1486762)
chr1 (10-83)||(8842729-8842802)
chr1 (46-83)||(14332657-14332694)
chr1 (40-81)||(21038084-21038125)
chr1 (47-88)||(40258943-40258984)
chr1 (8-72)||(609484-609548)
chr1 (25-101)||(1704989-1705065)
chr1 (46-82)||(9828051-9828087)
chr1 (8-80)||(15641048-15641120)
chr1 (2-86)||(16297295-16297379)
chr1 (19-83)||(16927200-16927264)
chr1 (25-81)||(17831548-17831604)
chr1 (48-88)||(18337338-18337378)
chr1 (42-82)||(39953162-39953202)
[»] chr6 (49 HSPs)
chr6 (12-106)||(12696297-12696391)
chr6 (15-83)||(10888989-10889057)
chr6 (19-86)||(25038083-25038150)
chr6 (19-88)||(17841599-17841668)
chr6 (19-83)||(1532218-1532284)
chr6 (14-83)||(7086770-7086839)
chr6 (14-83)||(8805587-8805656)
chr6 (12-101)||(16766670-16766759)
chr6 (28-88)||(7977840-7977900)
chr6 (19-83)||(13851716-13851780)
chr6 (12-88)||(16833281-16833357)
chr6 (25-101)||(18252748-18252824)
chr6 (8-83)||(7625091-7625166)
chr6 (42-101)||(21395305-21395363)
chr6 (12-83)||(30866159-30866230)
chr6 (46-101)||(31384927-31384982)
chr6 (8-106)||(3398588-3398685)
chr6 (27-93)||(17341669-17341735)
chr6 (12-101)||(9107367-9107456)
chr6 (14-83)||(9658854-9658923)
chr6 (19-88)||(17435179-17435248)
chr6 (37-82)||(24614408-24614453)
chr6 (20-85)||(25096404-25096469)
chr6 (12-88)||(426524-426600)
chr6 (12-88)||(7938089-7938165)
chr6 (12-88)||(8776983-8777059)
chr6 (25-81)||(10842518-10842574)
chr6 (12-88)||(31959132-31959208)
chr6 (14-82)||(34447374-34447442)
chr6 (12-88)||(34595107-34595183)
chr6 (12-83)||(9027151-9027222)
chr6 (32-83)||(9195769-9195820)
chr6 (46-101)||(10770671-10770726)
chr6 (10-81)||(17168480-17168551)
chr6 (28-83)||(19040341-19040396)
chr6 (46-81)||(26178698-26178733)
chr6 (45-88)||(28715301-28715344)
chr6 (12-82)||(5000642-5000712)
chr6 (25-83)||(5732525-5732583)
chr6 (46-88)||(6898291-6898333)
chr6 (25-83)||(7265608-7265666)
chr6 (25-83)||(13689507-13689565)
chr6 (47-88)||(403874-403915)
chr6 (25-86)||(5970120-5970181)
chr6 (47-88)||(6327528-6327569)
chr6 (19-88)||(28152079-28152147)
chr6 (47-83)||(7569183-7569219)
chr6 (20-88)||(15489742-15489810)
chr6 (19-83)||(16388248-16388311)
[»] chr8 (37 HSPs)
chr8 (7-99)||(8343284-8343376)
chr8 (8-94)||(4673429-4673515)
chr8 (12-88)||(24669406-24669482)
chr8 (42-88)||(7442848-7442894)
chr8 (12-94)||(22197746-22197828)
chr8 (20-81)||(13018262-13018323)
chr8 (13-101)||(2572053-2572141)
chr8 (12-88)||(20873042-20873118)
chr8 (12-101)||(25566822-25566903)
chr8 (8-88)||(28642377-28642457)
chr8 (45-88)||(8342978-8343021)
chr8 (2-88)||(29510314-29510400)
chr8 (25-83)||(34897071-34897129)
chr8 (25-83)||(39954294-39954352)
chr8 (12-101)||(22651949-22652038)
chr8 (27-88)||(24613509-24613569)
chr8 (12-88)||(4298896-4298972)
chr8 (25-101)||(15816126-15816202)
chr8 (19-83)||(24362217-24362281)
chr8 (2-101)||(13436961-13437060)
chr8 (33-83)||(4611528-4611578)
chr8 (46-88)||(4948659-4948701)
chr8 (45-83)||(14731718-14731756)
chr8 (22-88)||(20679405-20679471)
chr8 (26-88)||(22595981-22596043)
chr8 (45-83)||(25172713-25172751)
chr8 (46-83)||(7658470-7658507)
chr8 (8-101)||(10497813-10497906)
chr8 (46-83)||(13203648-13203685)
chr8 (19-88)||(36450764-36450833)
chr8 (47-83)||(11927101-11927137)
chr8 (8-88)||(25192357-25192437)
chr8 (25-77)||(27101501-27101553)
chr8 (25-101)||(30271288-30271364)
chr8 (12-88)||(31556970-31557045)
chr8 (19-83)||(36934650-36934714)
chr8 (48-88)||(40332200-40332240)
[»] chr4 (33 HSPs)
chr4 (25-101)||(30838196-30838272)
chr4 (12-88)||(847924-848000)
chr4 (12-88)||(21945476-21945552)
chr4 (25-88)||(2361985-2362048)
chr4 (8-99)||(31800477-31800568)
chr4 (25-99)||(903908-903982)
chr4 (6-83)||(44081592-44081669)
chr4 (25-101)||(4383354-4383429)
chr4 (12-88)||(40481610-40481685)
chr4 (45-101)||(51701264-51701320)
chr4 (45-88)||(37203270-37203313)
chr4 (20-106)||(3947758-3947844)
chr4 (14-72)||(20521875-20521933)
chr4 (25-83)||(22440615-22440673)
chr4 (47-88)||(6485621-6485662)
chr4 (12-88)||(23292996-23293072)
chr4 (25-101)||(27706174-27706250)
chr4 (45-88)||(11596362-11596405)
chr4 (13-88)||(14126121-14126196)
chr4 (45-88)||(28964258-28964301)
chr4 (45-88)||(29205450-29205493)
chr4 (17-83)||(13783259-13783325)
chr4 (14-88)||(19482643-19482717)
chr4 (19-88)||(30298926-30298996)
chr4 (19-88)||(30327794-30327864)
chr4 (19-72)||(34200297-34200348)
chr4 (42-83)||(8423733-8423774)
chr4 (25-88)||(20633471-20633531)
chr4 (13-74)||(43240995-43241056)
chr4 (47-103)||(16303261-16303317)
chr4 (47-83)||(24343515-24343551)
chr4 (45-101)||(35952614-35952670)
chr4 (15-83)||(40179651-40179719)
[»] chr7 (45 HSPs)
chr7 (8-83)||(5235955-5236030)
chr7 (12-101)||(27945014-27945103)
chr7 (8-88)||(11061086-11061166)
chr7 (8-86)||(6028594-6028672)
chr7 (19-83)||(7328706-7328770)
chr7 (8-88)||(13770660-13770740)
chr7 (12-83)||(15902795-15902866)
chr7 (11-68)||(4793835-4793892)
chr7 (23-88)||(9408344-9408409)
chr7 (14-83)||(26733279-26733348)
chr7 (14-82)||(598183-598251)
chr7 (23-83)||(5233613-5233673)
chr7 (31-83)||(17851423-17851475)
chr7 (19-83)||(20549771-20549835)
chr7 (44-88)||(21880157-21880201)
chr7 (12-88)||(24105651-24105727)
chr7 (31-90)||(11831424-11831483)
chr7 (19-101)||(10042917-10042999)
chr7 (42-88)||(28155573-28155619)
chr7 (25-106)||(5409828-5409909)
chr7 (46-91)||(5954254-5954299)
chr7 (42-83)||(8160419-8160460)
chr7 (48-101)||(12843172-12843225)
chr7 (12-101)||(24339615-24339704)
chr7 (25-82)||(32308106-32308163)
chr7 (19-83)||(22484005-22484069)
chr7 (8-88)||(25481871-25481951)
chr7 (45-101)||(26033458-26033514)
chr7 (45-85)||(30813818-30813858)
chr7 (45-140)||(18215144-18215239)
chr7 (8-88)||(21864775-21864857)
chr7 (25-91)||(1401011-1401077)
chr7 (25-83)||(42720905-42720963)
chr7 (20-97)||(22868023-22868100)
chr7 (25-94)||(23191882-23191951)
chr7 (42-83)||(27093428-27093469)
chr7 (42-83)||(27184832-27184873)
chr7 (48-101)||(27229308-27229360)
chr7 (42-83)||(29787384-29787425)
chr7 (15-83)||(3938119-3938187)
chr7 (2-82)||(4008580-4008660)
chr7 (2-82)||(4013972-4014052)
chr7 (12-72)||(11722124-11722184)
chr7 (13-101)||(43027466-43027554)
chr7 (12-88)||(43249966-43250042)
[»] scaffold0004 (1 HSPs)
scaffold0004 (25-94)||(92793-92862)
[»] chr2 (36 HSPs)
chr2 (19-88)||(39323244-39323313)
chr2 (13-88)||(20539684-20539759)
chr2 (12-83)||(23717999-23718070)
chr2 (12-83)||(24105671-24105742)
chr2 (20-88)||(4882706-4882774)
chr2 (12-88)||(30404860-30404936)
chr2 (6-101)||(36756341-36756436)
chr2 (25-94)||(21091709-21091778)
chr2 (19-88)||(21374709-21374778)
chr2 (22-83)||(23921236-23921297)
chr2 (19-97)||(6940235-6940313)
chr2 (46-88)||(18841023-18841065)
chr2 (13-83)||(21782833-21782903)
chr2 (25-83)||(31808063-31808121)
chr2 (14-83)||(21616737-21616806)
chr2 (14-83)||(28412325-28412394)
chr2 (19-88)||(30717540-30717609)
chr2 (31-88)||(42832286-42832343)
chr2 (23-83)||(15909647-15909707)
chr2 (46-86)||(30335424-30335464)
chr2 (47-83)||(40361769-40361805)
chr2 (14-88)||(14996233-14996308)
chr2 (42-101)||(31456638-31456697)
chr2 (40-83)||(34691820-34691863)
chr2 (40-83)||(34714232-34714275)
chr2 (19-88)||(21624246-21624316)
chr2 (19-101)||(30527592-30527674)
chr2 (47-88)||(15972881-15972922)
chr2 (42-83)||(28677912-28677953)
chr2 (40-81)||(36281686-36281727)
chr2 (42-83)||(36409642-36409683)
chr2 (19-88)||(37558957-37559026)
chr2 (14-86)||(12940947-12941019)
chr2 (25-81)||(29970566-29970622)
chr2 (8-88)||(33884020-33884100)
chr2 (19-83)||(37411259-37411323)
[»] scaffold1528 (1 HSPs)
scaffold1528 (1-80)||(997-1076)
[»] scaffold0223 (1 HSPs)
scaffold0223 (12-101)||(20145-20234)
[»] chr5 (33 HSPs)
chr5 (12-93)||(6326302-6326383)
chr5 (19-88)||(14674249-14674318)
chr5 (19-88)||(43001780-43001849)
chr5 (19-83)||(5467993-5468057)
chr5 (19-83)||(27144443-27144507)
chr5 (12-83)||(22013387-22013458)
chr5 (13-83)||(12927628-12927698)
chr5 (42-83)||(36838546-36838587)
chr5 (12-88)||(21191066-21191142)
chr5 (10-78)||(23220954-23221022)
chr5 (42-86)||(27932238-27932282)
chr5 (25-101)||(39698527-39698603)
chr5 (19-73)||(7175044-7175098)
chr5 (12-86)||(21522723-21522797)
chr5 (12-86)||(21533289-21533363)
chr5 (20-86)||(41633716-41633782)
chr5 (19-85)||(42488066-42488132)
chr5 (12-101)||(13287396-13287485)
chr5 (25-82)||(19438329-19438386)
chr5 (20-101)||(19579682-19579763)
chr5 (12-81)||(26205777-26205846)
chr5 (45-88)||(21576755-21576798)
chr5 (47-98)||(24906301-24906352)
chr5 (25-88)||(31084309-31084372)
chr5 (25-88)||(42893346-42893409)
chr5 (46-88)||(6247629-6247671)
chr5 (19-81)||(19168838-19168900)
chr5 (46-88)||(33178032-33178074)
chr5 (12-88)||(14422877-14422951)
chr5 (8-81)||(15410465-15410538)
chr5 (46-83)||(35017044-35017081)
chr5 (15-83)||(16203810-16203878)
chr5 (9-77)||(26609323-26609391)
[»] scaffold0722 (1 HSPs)
scaffold0722 (25-88)||(7042-7105)
[»] chr3 (40 HSPs)
chr3 (12-83)||(11665917-11665988)
chr3 (2-101)||(14829653-14829751)
chr3 (12-83)||(25064882-25064953)
chr3 (19-88)||(4990977-4991046)
chr3 (25-94)||(10268490-10268559)
chr3 (12-88)||(8587031-8587107)
chr3 (45-88)||(1509545-1509588)
chr3 (8-83)||(16192765-16192840)
chr3 (26-88)||(4987301-4987363)
chr3 (6-88)||(34307790-34307872)
chr3 (46-88)||(55401082-55401124)
chr3 (47-88)||(17568693-17568734)
chr3 (19-88)||(25948897-25948966)
chr3 (42-83)||(49505169-49505210)
chr3 (12-88)||(26508083-26508159)
chr3 (12-88)||(28917974-28918050)
chr3 (13-88)||(8383231-8383306)
chr3 (46-101)||(14209120-14209175)
chr3 (25-87)||(14747547-14747610)
chr3 (38-101)||(14832098-14832161)
chr3 (25-72)||(15544679-15544726)
chr3 (45-100)||(21256984-21257039)
chr3 (12-91)||(26492212-26492291)
chr3 (45-83)||(11313815-11313853)
chr3 (45-83)||(27277853-27277891)
chr3 (25-83)||(29508430-29508488)
chr3 (42-83)||(7928453-7928494)
chr3 (42-83)||(8039850-8039891)
chr3 (13-82)||(9800014-9800083)
chr3 (19-88)||(16000026-16000095)
chr3 (42-83)||(32804555-32804596)
chr3 (46-87)||(34910324-34910365)
chr3 (45-106)||(49651778-49651839)
chr3 (12-80)||(3164043-3164111)
chr3 (12-72)||(5441057-5441117)
chr3 (12-88)||(10335296-10335372)
chr3 (20-88)||(11610502-11610570)
chr3 (46-94)||(12083910-12083958)
chr3 (48-88)||(20503474-20503514)
chr3 (12-88)||(24205051-24205127)
[»] scaffold0103 (1 HSPs)
scaffold0103 (19-88)||(51791-51860)
[»] scaffold0246 (1 HSPs)
scaffold0246 (12-88)||(19549-19624)
[»] scaffold0053 (1 HSPs)
scaffold0053 (12-88)||(8771-8847)
[»] scaffold0018 (2 HSPs)
scaffold0018 (25-88)||(192259-192322)
scaffold0018 (12-94)||(178822-178905)
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-83)||(241567-241638)
[»] scaffold0086 (1 HSPs)
scaffold0086 (59-101)||(2948-2990)
[»] scaffold0049 (1 HSPs)
scaffold0049 (42-88)||(63776-63822)
[»] scaffold0027 (1 HSPs)
scaffold0027 (8-86)||(46651-46729)
[»] scaffold0011 (1 HSPs)
scaffold0011 (46-88)||(17759-17801)
[»] scaffold0306 (1 HSPs)
scaffold0306 (12-87)||(13373-13448)
[»] scaffold0152 (1 HSPs)
scaffold0152 (12-87)||(21879-21954)
[»] scaffold0136 (1 HSPs)
scaffold0136 (14-101)||(3846-3933)
[»] scaffold0361 (1 HSPs)
scaffold0361 (46-88)||(14537-14579)
[»] scaffold0022 (1 HSPs)
scaffold0022 (13-83)||(90817-90887)
[»] scaffold0020 (1 HSPs)
scaffold0020 (19-125)||(135285-135391)
[»] scaffold0008 (1 HSPs)
scaffold0008 (19-101)||(263369-263451)
[»] scaffold0598 (1 HSPs)
scaffold0598 (19-80)||(8071-8132)
[»] scaffold0085 (1 HSPs)
scaffold0085 (19-72)||(26373-26426)
[»] scaffold0066 (1 HSPs)
scaffold0066 (45-86)||(33375-33416)
[»] scaffold0050 (1 HSPs)
scaffold0050 (20-88)||(70259-70327)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 55)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 37055953 - 37055622
Alignment:
Q  1 aacatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtg 100  Q
    |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37055953 aacacgaacatcggacatgacacagacactgatacatcgatactgctaataatttgagaaaattacataatttagtgtaattacaagtatcagtatcgtg 37055854  T
Q  101 tgggacgcctgaacacgcctaatctacggagtggccgtgcatcatagcttatattgcataacttttctgacaaatacattcatgatnnnnnnnngcatac 200  Q
    || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        ||||||    
T  37055853 tgtgacacctggacacgcctaatctacggagtggccgtgcatcatagcttatattgcataacttttctgacaaatacatacatgat-aaaaaaagcatac 37055755  T
Q  201 aagacaaaagaattaagtcaaagtgtaaagagagaaagattttccaaaacaggtttagtatgcagatgcattaacagtgccttattgtagggtagaattt 300  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37055754 aagacaaaagaattaagtcaaagtgtaaagaaagaaagattttccaaaacaggtttagtatgcatatgcattaacagtgccttattgtagggtagaattt 37055655  T
Q  301 attaatgataagaagagataagagtgtaggaac 333  Q
    |||||||||||||||||||||||||||||||||    
T  37055654 attaatgataagaagagataagagtgtaggaac 37055622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 41877554 - 41877480
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||| |||||||||||||  ||  ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  41877554 gacacgacacagacactggtacgccgacaccgctaataatttgagaaaattacataatttagtgtaattacaagt 41877480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 6612263 - 6612168
Alignment:
Q  6 gaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| |||||| ||||| |||| ||||||  |||||| | ||||||||||| |||||||||||||| ||||||||||||||| || || ||||||    
T  6612263 gaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgt 6612168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17754273 - 17754352
Alignment:
Q  1 aacatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaa 80  Q
    |||||||||| || | | ||||||||| |||||||| ||| |||||||||||||||| |||||||||||||| |||||||    
T  17754273 aacatgaacaccgtatacgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaa 17754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 27471645 - 27471579
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattaca 85  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||  |||||||| ||||||||||||    
T  27471645 gacacaaacactgacacaccgataccgctaataatttgagaaaagcacataattcagtgtaattaca 27471579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 14359607 - 14359532
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||||||||| |||||  ||| || ||||||||||||| ||||| ||||||||||||||||||||||||    
T  14359607 cggacacgacacagacacggacacgccgacacagctaataatttga-aaaatcacataatttagtgtaattacaagt 14359532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 48450673 - 48450597
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  | | || ||||||||||||| ||||| ||||||||||||||||||||||||    
T  48450673 cggacacgacacggacactgacacgccaacacagctaataatttgaaaaaataacataatttagtgtaattacaagt 48450597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 398851 - 398780
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| ||||| |||||||||||  ||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  398851 cggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatta 398780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 5898352 - 5898281
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||||||||||| ||  ||| |||||||||||| ||| ||||| |||||||| ||||||||||    
T  5898352 cggacatgacacagacactgagacgccgacaccgctaataatctgaaaaaatcacataattcagtgtaatta 5898281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 34258000 - 34257925
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||| || || | |||||| |||| |||| ||||||||| ||||||| |||||||||||||||||||    
T  34258000 acatcggacatgatacggatattgacacgtcgacaccgttaataatttaataaaatcacataatttagtgtaatta 34257925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 15323136 - 15323225
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||  ||||||||||  ||||||| | ||||||||||| ||||| ||||||||||||||||||  |||| || |||||||||    
T  15323136 cggacacgacatggacactgacatgtcgatacagttaataatttgaaaaaatcacataatttagtgtaattgtaagtgtctgtatcgtgt 15323225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 20157436 - 20157367
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    |||||| ||||| | |||||||||||||| |||||||||||| ||| ||||| |||||||| ||||||||    
T  20157436 cggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatcacataattcagtgtaat 20157367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 46348462 - 46348393
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| || ||||||||||||| ||||| | ||||||||||||||||||||||    
T  46348462 gacacggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagt 46348393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 9629973 - 9629897
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| |||||||||| |||||||||||||||||||||| | |||||| ||||| |||| |||| || || ||||||    
T  9629973 gacaccgacacatcgacaccgctaataatttgataaaatcatataattcagtgtgattataagtgtcggtgtcgtgt 9629897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 36878441 - 36878505
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||||||||||  ||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  36878441 gacatagacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatta 36878505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 18556535 - 18556464
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtat 90  Q
    ||||| |||||||||||  ||| || ||||||||||||| || || |||||||||| |||||||||||||||    
T  18556535 gacacggacactgacacgccgacacagctaataatttgaaaatatcacataatttaatgtaattacaagtat 18556464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 21378552 - 21378627
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| ||||| ||||  |||||| ||| || |||||||| |||| |||||||||||||| |||||||||||||||    
T  21378552 ggacacgacacggacatggacacaccgacacagctaataaattgaaaaaattacataattcagtgtaattacaagt 21378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 22515940 - 22515897
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  22515940 gctaataatttgaaaaaatcacataatttagtgtaattacaagt 22515897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 22881689 - 22881626
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||  ||| ||  |||||||||||| ||||| ||||||||||||||||||||||||    
T  22881689 gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagt 22881626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 31672968 - 31672905
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| ||| || ||||||||||||| ||||| || ||||| |||||||||||||||    
T  31672968 gacactgacacaccgacacagctaataatttgaaaaaatcacttaattcagtgtaattacaagt 31672905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 18190160 - 18190118
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  18190160 ctaataatttgaaaaaattacataattcagtgtaattacaagt 18190118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 38078733 - 38078671
Alignment:
Q  26 acactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| |||| || ||||||||||||| ||||| |||||||| | |||||||||||||    
T  38078733 acactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagt 38078671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 38503294 - 38503364
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||| |||||| ||||| ||| |||||||||||||||| ||||| | ||| || ||||||||||    
T  38503294 ggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaatta 38503364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 5376586 - 5376497
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||| |||||| ||||  ||| |||||||||||||| | ||||| |||||||| |||||||||| |||| || || ||||||    
T  5376586 cggacacgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgt 5376497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 34298411 - 34298480
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||| || ||||||||| ||| ||| |||||||||||| ||||| |||||||| ||||||||||    
T  34298411 gacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaatta 34298480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 34712436 - 34712375
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggac 106  Q
    ||||||||||||| ||||| ||||||||||||||||||| | || ||||| |||||| ||||    
T  34712436 gctaataatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtcggac 34712375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 5944250 - 5944345
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttg--ataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||| |||||||||||||||||  ||  || ||||||||||||  | ||||| |||||||| |||||||||| |||| || || ||||||    
T  5944250 acatcggacacgacacagacactgacacgccgccacagctaataatttgaaaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgt 5944345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 113305 - 113348
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  113305 gctaataatttgaaaaaatcacataattcagtgtaattacaagt 113348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 2851024 - 2851059
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtg 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  2851024 accgctaataatttgataaaattacataattcagtg 2851059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 2896199 - 2896140
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgta 79  Q
    |||| |||||||||||  ||| |||||||||||||||| ||||| |||||||| ||||||    
T  2896199 acacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta 2896140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 3490463 - 3490400
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||  ||| || ||||||||||||| |||| ||||| ||| |||||||||||||||    
T  3490463 gacactgacacgccgacactgctaataatttgagaaaactacattattcagtgtaattacaagt 3490400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 6332678 - 6332732
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||| || ||||||    
T  6332678 ctaataatttga-aaaatcacataattcagtgtaattacaagtatcggtgtcgtgt 6332732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 7918307 - 7918208
Alignment:
Q  2 acatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| ||| |||||| |||||||||| ||||||   || | | |||||||||||| ||||| |||||||| |||||||||| | || ||||| ||||||    
T  7918307 acatggacaccggacacgacacagacaatgacacgctgacatcactaataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgt 7918208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 24577238 - 24577183
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||| ||||| |||||||| ||||||||||||||| || || ||||||    
T  24577238 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 24577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 31015049 - 31015092
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  31015049 gctaataatttgagaaaatcacataattcagtgtaattacaagt 31015092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 2218265 - 2218347
Alignment:
Q  65 acataatttagtgtaattacaagtatcagtatcgtgtgggacgcctgaacacgcctaatctacggagtggccgtgcatcatag 147  Q
    |||||||||||||||||||||||| || || ||||||  ||| |  | |||||||||||||  |||||| |||||| ||||||    
T  2218265 acataatttagtgtaattacaagtgtcggtgtcgtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcatag 2218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 5927426 - 5927344
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagt 94  Q
    |||||| ||||| |||||||||||    | || ||||||||||||| ||||| | |||||||| ||||||||||||| |||||    
T  5927426 cggacacgacacggacactgacacgctaacactgctaataatttgaaaaaatcatataatttaatgtaattacaagtgtcagt 5927344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 16812519 - 16812581
Alignment:
Q  15 acatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtg 77  Q
    ||||||||| |||||||||||| ||| |||  ||||||||||| ||||| |||||||| ||||    
T  16812519 acatgacacggacactgacacaccgacaccaataataatttgacaaaatcacataattcagtg 16812581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 23804430 - 23804472
Alignment:
Q  41 taccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||    
T  23804430 taccgttaataatttgataaaattatataatttaatgtaatta 23804472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 25272451 - 25272545
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtg 102  Q
    ||||| |||| |||||| |||| ||||| | || || | ||| ||||||| ||||| ||||||||||||||||||| |||| || || |||||||    
T  25272451 acatcagacacgacacaaacacagacactttgacacagttaacaatttgagaaaatcacataatttagtgtaattataagtgtcggtgtcgtgtg 25272545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 32461515 - 32461473
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| ||||| |||||||||| |||||||||||||    
T  32461515 ctaataatttgaaaaaatcacataatttaatgtaattacaagt 32461473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 1486762 - 1486701
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggac 106  Q
    ||||||||||||| ||||| |||||||| |||||||||| |||| || || |||||| ||||    
T  1486762 gctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggac 1486701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 8842802 - 8842729
Alignment:
Q  10 atcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||||||||||||||||  ||  ||| ||| |||||||| ||||  | |||||||| ||||||||    
T  8842802 atcggacatgacacagacactgacacgccggcaccactagtaatttgagaaaaacatataatttaatgtaatta 8842729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 14332694 - 14332657
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  14332694 ctaataatttgagaaaatcacataatttagtgtaatta 14332657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 21038084 - 21038125
Alignment:
Q  40 ataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    |||||||||||||||| | |||||||||||||| ||||||||    
T  21038084 ataccgctaataatttaagaaaattacataattcagtgtaat 21038125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 40258984 - 40258943
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||| ||||| |||||||| |||||||||||||||    
T  40258984 taataatttgaaaaaatcacataattcagtgtaattacaagt 40258943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 609548 - 609484
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatt 72  Q
    |||||||||| ||||   ||||||||||  ||| ||| |||||||||||| ||||||||||||||    
T  609548 acatcggacacgacatcaacactgacacgccgacaccactaataatttgagaaaattacataatt 609484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 1705065 - 1704989
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| |||||| ||| ||  |||||||||||| ||||| |||||||| || |||||||||||| || || ||||||    
T  1705065 gacaccgacacaccgacacatctaataatttgaaaaaatcacataattcagggtaattacaagtgtcggtgtcgtgt 1704989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 9828051 - 9828087
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaatt 82  Q
    |||||||||||||||||| |||||||| |||||||||    
T  9828051 ctaataatttgataaaatcacataattcagtgtaatt 9828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 15641120 - 15641048
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaa 80  Q
    |||||||||||||||| ||||||||||   ||| || ||||||||||| | ||||| |||| ||| |||||||    
T  15641120 acatcggacatgacacggacactgacatgccgacactgctaataatttaagaaaatcacatgattcagtgtaa 15641048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 16297379 - 16297295
Alignment:
Q  2 acatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    ||||| |||||||||| || || || |||||||| |||| || || |||||| ||| ||||| ||| |||| |||||||||||||    
T  16297379 acatggacatcggacacgatacggatactgacacgtcgacacagcaaataatatgaaaaaatcacaaaattcagtgtaattacaa 16297295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 16927264 - 16927200
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||||||| |||  |  ||||||||||||| ||||| | |||||| ||||||||||    
T  16927264 gacacagacactgacacgtcggcatagctaataatttgaaaaaatcatataattcagtgtaatta 16927200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 17831604 - 17831548
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    |||||||||||  ||| |||||||||||||||| ||||| |||| ||| ||||||||    
T  17831604 gacactgacacgccgacaccgctaataatttgagaaaatcacattattcagtgtaat 17831548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 18337338 - 18337378
Alignment:
Q  48 aataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| ||||| |||||||| |||||||||||||||    
T  18337338 aataatttgaaaaaatcacataattcagtgtaattacaagt 18337378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 39953202 - 39953162
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatt 82  Q
    |||||||||||||| | ||||| ||||||||||||||||||    
T  39953202 accgctaataattttagaaaatcacataatttagtgtaatt 39953162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 12696297 - 12696391
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggac 106  Q
    |||||| ||||| |||||||||||  ||| || ||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||| ||||    
T  12696297 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgtcggac 12696391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 10889057 - 10888989
Alignment:
Q  15 acatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||| ||||| ||||||| || |||||||||||||||||||||| |||||||||||||| ||||    
T  10889057 acatgacacggacaccgacacatagacaccgctaataatttgataaaatcacataatttagtgtgatta 10888989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 25038150 - 25038083
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    |||||||| |||||||| | || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  25038150 gacacagatactgacacgttgacaccgttaataatttgagaaaattacataatttagtgtaattacaa 25038083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 17841668 - 17841599
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| || ||||||||||||| ||||| ||||||||||||||||||||||||    
T  17841668 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattacaagt 17841599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 1532218 - 1532284
Alignment:
Q  19 gacacagacactgacacatcgatac--cgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| |||||||||| |||| ||  ||||||||||||||||||||||||||||| ||||||||||    
T  1532218 gacacaaacactgacacgtcgacacaccgctaataatttgataaaattacataattcagtgtaatta 1532284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 7086770 - 7086839
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||||||||| ||||| |||  || ||||||||||||| ||||| |||||||||||||||||||    
T  7086770 gacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaatta 7086839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 8805656 - 8805587
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||||||||| ||||| |||  || ||||||||||||| ||||| |||||||||||||||||||    
T  8805656 gacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaatta 8805587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 16766670 - 16766759
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||  |||||||||||  ||| || ||||||||||||| ||||| |||||||| ||||||||||||||| || || ||||||    
T  16766670 cggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 16766759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 7977900 - 7977840
Alignment:
Q  28 actgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||  ||| || ||||||||||||| |||||||||||||| |||||||||||||||    
T  7977900 actgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagt 7977840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 13851716 - 13851780
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||| ||||||||||| |||| |||||||||||||||| ||||| || ||||| ||||||||||    
T  13851716 gacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaatta 13851780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 16833281 - 16833357
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| |||||||||||||||||  ||| ||  |||||||||||| ||||| ||||| || |||||||||||||||    
T  16833281 cggacacgacacagacactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaattacaagt 16833357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 18252824 - 18252748
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| |||||  |||||||| ||||||||| | ||||| ||||||||||||||||||||| || || |||||||||    
T  18252824 gacacagacactccgataccgataataatttaaaaaaatgacataatttagtgtaattacaggtgtcggtatcgtgt 18252748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 7625091 - 7625166
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||| ||||||||||| ||||| |||| || | ||||||||||| ||||| | |||||||||| ||||||    
T  7625091 acatcggacacgacacagacaccgacacgtcgacacggataataatttgagaaaatgatataatttagtataatta 7625166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 21395363 - 21395305
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||| || || ||||||    
T  21395363 accgctaataatttgagaaaat-acataatttagtgtaattacaagtgtcggtgtcgtgt 21395305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 30866230 - 30866159
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| ||||| |||||| | | |||||||||||||||| ||||| |||||||| | ||||||||    
T  30866230 cggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaatta 30866159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 31384927 - 31384982
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||    
T  31384927 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt 31384982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 3398588 - 3398685
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggac 106  Q
    |||||| ||| ||||| |||||||||||  ||| || ||||||||||||| ||||| | |||||| |||||||||| ||||||| || |||||| ||||    
T  3398588 acatcgaacacgacacggacactgacacgccgacacagctaataatttga-aaaatcatataattcagtgtaattataagtatcggtgtcgtgttggac 3398685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 17341735 - 17341669
Alignment:
Q  27 cactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcag 93  Q
    |||||||||  ||| |||| ||||||||||||||||| |||||||| |||||||||| |||| ||||    
T  17341735 cactgacacgccgacaccgttaataatttgataaaatcacataattcagtgtaattataagtgtcag 17341669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 9107456 - 9107367
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||| |||||| ||||  ||| || ||||||||||||| ||||| ||| |||| ||||||||||||||| || || ||||||    
T  9107456 cggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgt 9107367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 9658854 - 9658923
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||| |||||||||||  ||| |||||||||||||| | ||||| |||||||| ||||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaatta 9658923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 17435179 - 17435248
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||| || |||| |  ||||||||||| | |||||||||||||| |||||||||||||||    
T  17435179 gacacggacactgatacgtcgacatagctaataattttaaaaaattacataattcagtgtaattacaagt 17435248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 24614408 - 24614453
Alignment:
Q  37 tcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||||    
T  24614408 tcgataccgctaataatttaaaaaaattatataatttagtgtaatt 24614453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 25096404 - 25096469
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattaca 85  Q
    |||||||||| |||||  ||| ||| |||||||||||| ||||| ||||||| |||||||||||||    
T  25096404 acacagacaccgacacgacgacaccactaataatttgagaaaatcacataatctagtgtaattaca 25096469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 426600 - 426524
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||| || | ||||||||||| ||||| |||||||| | |||||||||||||    
T  426600 cggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagt 426524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 7938089 - 7938165
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||  |||||||||||  ||| || ||||||||||||| ||||| | ||||||||||||||||| ||||    
T  7938089 cggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagt 7938165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 8777059 - 8776983
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||| ||  |||||||||||| ||||| ||| |||| |||||||||||||||    
T  8777059 cggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaagt 8776983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 10842518 - 10842574
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    ||||| |||||  ||| |||||||||||||||| ||||| |||||||||||||||||    
T  10842518 gacacggacacgccgacaccgctaataatttgaaaaaatcacataatttagtgtaat 10842574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 31959132 - 31959208
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||  ||||||||||  ||  || ||||||||||||| ||||| |||||||  |||||||||||||||    
T  31959132 cggacatgacacgaacactgacacgccgtcacagctaataatttgaaaaaatcacataatgcagtgtaattacaagt 31959208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 34447442 - 34447374
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    ||||| ||||||||| ||||||  | | |||| ||||||||||||||||| | ||||||||||||||||    
T  34447442 gacataacacagacaatgacacgccaacaccgttaataatttgataaaatcatataatttagtgtaatt 34447374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 34595107 - 34595183
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||| ||||||  ||| ||  |||||||||||| ||||| |||||||| |||||||||||||||    
T  34595107 cggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagt 34595183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 9027151 - 9027222
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| ||||| |||||||||||  ||| |||||||||||||||| | ||| ||||||||  |||||||||    
T  9027151 cggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaatta 9027222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 9195820 - 9195769
Alignment:
Q  32 acacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||| ||  |||||||||||| ||||| |||||||||||||||||||    
T  9195820 acacatcgacactcctaataatttgagaaaatgacataatttagtgtaatta 9195769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 10770726 - 10770671
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||| ||||| |||||||| ||||||||||||||| || || ||||||    
T  10770726 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 10770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 17168551 - 17168480
Alignment:
Q  10 atcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    ||||||||||||| ||||||||||||  | | || | ||||||||||| ||||| | |||||||||||||||    
T  17168551 atcggacatgacatagacactgacacgccaacactgataataatttgagaaaatgatataatttagtgtaat 17168480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 19040341 - 19040396
Alignment:
Q  28 actgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||  ||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  19040341 actgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatta 19040396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 26178733 - 26178698
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaat 81  Q
    |||||||||||||||||| |||||||||||||||||    
T  26178733 ctaataatttgataaaatcacataatttagtgtaat 26178698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 28715301 - 28715344
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  28715301 gctaataatttgaaaaaatgacataattcagtgtaattacaagt 28715344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 5000712 - 5000642
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    |||||||||||| || |||||||| |||| ||||||||||||| || ||||| |||| ||| ||| |||||    
T  5000712 cggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatcacatgattcagtataatt 5000642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 5732583 - 5732525
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||  ||| |||| ||||||||||| ||||| ||||| |||||||||||||    
T  5732583 gacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaatta 5732525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 6898333 - 6898291
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||  ||||||||||||| |||||||||||||||    
T  6898333 ctaataatttgaacaaattacataattaagtgtaattacaagt 6898291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 7265666 - 7265608
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||  | | |||||||||||||||| ||||| |||||||| ||||||||||    
T  7265666 gacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaatta 7265608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 13689565 - 13689507
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||| ||||| | |||||||||||||||||||||| | | ||||| |||||||||    
T  13689565 gacactgatacatcaacaccgctaataatttgataaaatcatacaatttcgtgtaatta 13689507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 403915 - 403874
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
T  403915 taataatttgaaaaaatcacataatttagtgtaactacaagt 403874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 5970181 - 5970120
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    ||||| ||||| |||| || | ||||||||||| ||||| |||||||| |||||||||||||    
T  5970181 gacacggacacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaattacaa 5970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 6327569 - 6327528
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||| ||||||| |||||| |||||||||||||||    
T  6327569 taataatttgaaaaaattatataattaagtgtaattacaagt 6327528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 28152079 - 28152147
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| |  ||||||||||||| ||||| |||||||| |||||||||||||||    
T  28152079 gacacggacactgacacgccgacaaagctaataatttga-aaaatcacataattcagtgtaattacaagt 28152147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 7569219 - 7569183
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  7569219 taataatttgagaaaattacataattcagtgtaatta 7569183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 15489810 - 15489742
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||| |||||| |||| |||| ||  |||||||||||| ||||||||| |||| | |||||||||||||    
T  15489810 acacggacactaacacgtcgacacaactaataatttgaaaaaattacacaattcaatgtaattacaagt 15489742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 16388311 - 16388248
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||| ||||||||||| ||||||  || |||||||||| ||||| |||||||| ||||||||||    
T  16388311 gacacggacactgacacgtcgata-agcaaataatttgaaaaaatcacataattcagtgtaatta 16388248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 8343284 - 8343376
Alignment:
Q  7 aacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgt 99  Q
    ||||||||||| ||||| ||||| |||||| ||| |  ||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||    
T  8343284 aacatcggacacgacactgacaccgacacaccgacatagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcagtgtcgt 8343376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 4673515 - 4673429
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagt 94  Q
    |||||||||| |||||||||||||||||  ||| || | ||||||||||| ||||| | | |||| |||||||||||||||||||||    
T  4673515 acatcggacacgacacagacactgacacgccgacacagataataatttgaaaaaatcataaaattcagtgtaattacaagtatcagt 4673429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 24669406 - 24669482
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| |||||||||||||||||   || |||| |||||||||||  ||||||||||||| |||||||||||||||    
T  24669406 cggacacgacacagacactgacacgctgacaccgttaataatttgaggaaattacataattcagtgtaattacaagt 24669482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 7442848 - 7442894
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||    
T  7442848 accgctaataatttcataaaattacataattcagtgtaattacaagt 7442894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 22197828 - 22197746
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagt 94  Q
    |||||| |||||||||||| ||||  | | || ||||||||||||| ||| | |||||||||||||||||||||||| |||||    
T  22197828 cggacacgacacagacactaacacgccaacacagctaataatttgaaaaattcacataatttagtgtaattacaagtgtcagt 22197746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 13018262 - 13018323
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    ||||||||||| |||| || |||||| ||||||||||| ||||| |||||||||||||||||    
T  13018262 acacagacactaacacgtcaataccgttaataatttgacaaaatcacataatttagtgtaat 13018323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 2572141 - 2572053
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| ||||| || || ||||| |||| ||  |||||||||||| ||||| |||||||||||||||||||||||| || || ||||||    
T  2572141 ggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgt 2572053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 20873042 - 20873118
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||| |  | ||||||||||| ||||| ||||||||||||||||||||||||    
T  20873042 cggacacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaattacaagt 20873118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 25566822 - 25566903
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||||||||||||||||        ||||||||||||| ||||| |||||||| ||||||||||||||| || || ||||||    
T  25566822 cggacatgacacagacactgacaca--------gctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 25566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 28642377 - 28642457
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| ||||| |||| |||||||| || || | ||||||||||| ||| |||||||||| ||||||| |||||||    
T  28642377 acatcggacacgacacggacaatgacacattgacacggttaataatttgaaaaatttacataattcagtgtaactacaagt 28642457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 8342978 - 8343021
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  8342978 gctaataatttgaaaaaatcacataatttagtgtaattacaagt 8343021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 29510400 - 29510314
Alignment:
Q  2 acatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| ||| |||||| ||||| |||||||||||  ||| || ||||||||||||| ||||| ||| |||| ||| |||||||||||    
T  29510400 acatggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattacaagt 29510314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 34897071 - 34897129
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||| ||||| |||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  34897071 gacacagacacgtcgacaccgctaataatttgagaaaatcacataattcagtgtaatta 34897129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 39954352 - 39954294
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||| |||||  ||| |||||||||||||||| ||||| |||||||||||||||||||    
T  39954352 gacaccgacacgccgacaccgctaataatttgagaaaatcacataatttagtgtaatta 39954294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 22651949 - 22652038
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||| |||||||||||  ||| || ||||||||||||| ||||| |||||||| | | ||||||||||| || || ||||||    
T  22651949 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgt 22652038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 24613509 - 24613569
Alignment:
Q  27 cactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| ||| || ||||||||||||| ||||| |||||||| |||||||||||||||    
T  24613509 cactgacacaccgacacagctaataatttga-aaaatcacataattaagtgtaattacaagt 24613569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 4298972 - 4298896
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| |||||||| ||| ||||  ||| || | ||||||||||| ||||| |||||||||| |||||||||||||    
T  4298972 cggacacgacacagatactaacacgccgacacagttaataatttgaaaaaatcacataatttaatgtaattacaagt 4298896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 15816202 - 15816126
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||  ||| ||  |||||||||||| ||||| ||||||||||||||||||| |||| || || ||||||    
T  15816202 gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgt 15816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 24362281 - 24362217
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||| |||||  ||| |||||||||||||||| | ||| |||||||| ||||||||||    
T  24362281 gacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaatta 24362217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 13437060 - 13436961
Alignment:
Q  2 acatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| ||| |||||||||||  |||||||||||  ||| || ||||||||||||| ||||| |||||||| |  ||||| |||||| || || ||||||    
T  13437060 acatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcatggtaataacaagtgtcggtgtcgtgt 13436961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 4611528 - 4611578
Alignment:
Q  33 cacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  4611528 cacaccgacaccgctaataatttgagaaaataacataattcagtgtaatta 4611578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 4948659 - 4948701
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| ||||| |||||||| |||||||||||||||    
T  4948659 ctaataatttgaaaaaatcacataattcagtgtaattacaagt 4948701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 14731718 - 14731756
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  14731718 gctaataatttgagaaaatcacataatttagtgtaatta 14731756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 20679471 - 20679405
Alignment:
Q  22 acagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||||  |||| ||| |||||||||||| ||||| ||||| || |||||||||| ||||    
T  20679471 acagacactgacatgtcgacacccctaataatttgagaaaatcacatagttcagtgtaattataagt 20679405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 22595981 - 22596043
Alignment:
Q  26 acactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||  ||| || ||||||||||| | ||||| |||||||| |||||||||||||||    
T  22595981 acactgacacgccgacacagctaataatttaaaaaaataacataattcagtgtaattacaagt 22596043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 25172751 - 25172713
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  25172751 gctaataatttgataaaattacatattttaatgtaatta 25172713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 7658470 - 7658507
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  7658470 ctaataatttgagaaaattacataattcagtgtaatta 7658507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 10497906 - 10497813
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||||||| ||||| |||||  ||| || | ||| | ||||| ||||| |||||||||  |||||| |||||| ||||||||||||    
T  10497906 acatcgaacatgacactgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtcagtatcgtgt 10497813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 13203648 - 13203685
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  13203648 ctaataatttgagaaaattacataattcagtgtaatta 13203685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 36450833 - 36450764
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| ||  |||||||||||| ||||| ||| |||| |||||||||||||||    
T  36450833 gacacggacactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaagt 36450764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 11927137 - 11927101
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  11927137 taataatttgataaaatcacataattcagtgtaatta 11927101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 25192437 - 25192357
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| || || |||||||||||  ||| || ||||||||||||| ||| | |||||||| ||| |||||| ||||    
T  25192437 acatcggacacgatacggacactgacacgccgacacagctaataatttgaaaaagtgacataattcagtataattataagt 25192357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 27101501 - 27101553
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtg 77  Q
    |||| ||||||  ||| |||||||||||||||| ||||| |||||||||||||    
T  27101501 gacattgacacgccgacaccgctaataatttgaaaaaatcacataatttagtg 27101553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 30271364 - 30271288
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||  ||| || |||||| |||||| ||||| |||||||  |||||||||||||||  |||| ||||||    
T  30271364 gacactgacacgccgacacagctaatcatttgaaaaaatcacataatgcagtgtaattacaagtgccagtgtcgtgt 30271288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 31556970 - 31557045
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||  | |||||||||  ||| || | ||||||||||| ||||| |||||||| |||||||||||||||    
T  31556970 cggacatgacatggtcactgacacgccgacacagttaataatttga-aaaatcacataattcagtgtaattacaagt 31557045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 36934650 - 36934714
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||| |||||| |||| |||| ||||||||||||| || ||||| |||||||| | ||||||||    
T  36934650 gacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaatta 36934714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 40332200 - 40332240
Alignment:
Q  48 aataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| ||||| |||||||| |||||||||||||||    
T  40332200 aataatttgagaaaatcacataattcagtgtaattacaagt 40332240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 30838196 - 30838272
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||    
T  30838196 gacactgatacgtcgatactgctaataatttgataaaattatataatttagtgtaattataagtatcggtgtcgtgt 30838272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 847924 - 848000
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| |||||||||||||||||  |||| ||||||||||||||| |||||||||||||| | | |||||||||||    
T  847924 cggacacgacacagacactgacacgccgatgccgctaataatttgagaaaattacataattcactataattacaagt 848000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 21945476 - 21945552
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||||||||||||||   ||| || ||||||||||||| ||||| |||||||| |||||||||||||||    
T  21945476 cggacatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaattacaagt 21945552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 2362048 - 2361985
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||| ||||||| ||| || ||||||||||||| ||||||||||||||||||||||||| ||||    
T  2362048 gacattgacacaccgacacagctaataatttgaaaaaattacataatttagtgtaattaaaagt 2361985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 31800568 - 31800477
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgt 99  Q
    |||| |||||||||||  |||| |||||| ||| || ||||||||||| | ||||||| |||||||| ||||||||||||| || |||||||    
T  31800568 acattggacatgacacgaacaccgacacaccgacacagctaataattttaaaaaattaaataatttaatgtaattacaagtgtcggtatcgt 31800477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 903908 - 903982
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgt 99  Q
    |||||||||||| ||  |||| ||||||||||| ||||| |||||||| |||||||||| | |||||||||||||    
T  903908 gacactgacacaccggcaccgttaataatttgagaaaatcacataattcagtgtaattatatgtatcagtatcgt 903982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 44081669 - 44081592
Alignment:
Q  6 gaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| ||||  |||||||||||| ||||| || ||||||||||| ||||| | |||||||| ||||||||    
T  44081669 gaacatcggacacgacaaggacactgacacaccgatatcgttaataatttgaaaaaatcatataatttaatgtaatta 44081592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 4383354 - 4383429
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||||||||| |||||||  |||||||||||| ||||| |||||||| ||||||||||||| | ||||| ||||||    
T  4383354 gacactgacacgtcgatacaactaataatttga-aaaatcacataattcagtgtaattacaaatgtcagtgtcgtgt 4383429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 40481610 - 40481685
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||||||  |||||||||||| ||||| |||||||| |||||||||||||||    
T  40481610 cggacacgacactgacactgacacgccgatacaactaataatttga-aaaatcacataattcagtgtaattacaagt 40481685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 51701264 - 51701320
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| | ||| ||||||    
T  51701264 gctaataatttgaaaaaattacataattgagtgtaattacaagtgttagtgtcgtgt 51701320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 37203270 - 37203313
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  37203270 gctaataatttgaaaaaatgacataatttagtgtaattacaagt 37203313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 3947844 - 3947758
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggac 106  Q
    |||||||||| ||||   ||| || ||||||||||||| |||||  ||||||| ||||||||||||||| ||||| |||||| ||||    
T  3947844 acacagacacggacatgccgacacagctaataatttgaaaaaatcgcataattcagtgtaattacaagtgtcagtgtcgtgtcggac 3947758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 20521933 - 20521875
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatt 72  Q
    |||| ||||| |||||||||||  |||||||| ||||||||||||||||| ||||||||    
T  20521933 gacacgacacggacactgacacgccgataccgataataatttgataaaatcacataatt 20521875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 22440673 - 22440615
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||| ||||||| |||| ||||||||||| ||||| |||||||| ||||||||||    
T  22440673 gacactgatacatcgacaccgttaataatttgagaaaatcacataattcagtgtaatta 22440615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 6485662 - 6485621
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  6485662 taataatttgaaaaaatcacataatttagtgtaattacaagt 6485621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 23293072 - 23292996
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||| ||||||  ||| || ||||||||||||| ||||| |||||||| ||| |||||||||||    
T  23293072 cggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagt 23292996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 27706250 - 27706174
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||||||||| |||| ||   ||||||||| | ||||| |||||||||||||||||||||||| | ||| ||||||    
T  27706250 gacactgacacgtcgacacaattaataatttaaaaaaatcacataatttagtgtaattacaagtgtgagtgtcgtgt 27706174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 11596405 - 11596362
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  11596405 gctaataatttgaaaaaatcacataattcagtgtaattacaagt 11596362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 14126196 - 14126121
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||| ||||  ||| || | ||||||||||||||| | |||||||| |||||||||| ||||    
T  14126196 ggacacgacacagacactaacacgccgacactgttaataatttgataaagtcacataattcagtgtaattataagt 14126121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 28964301 - 28964258
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  28964301 gctaataatttgaaaaaatcacataattcagtgtaattacaagt 28964258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 29205450 - 29205493
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  29205450 gctaataatttgaaaaaatcacataattcagtgtaattacaagt 29205493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 13783259 - 13783325
Alignment:
Q  17 atgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||| |||||||||||| ||| ||||||||| |||||| || || ||| |||| ||||||||||    
T  13783259 atgacacggacactgacacaccgacaccgctaattatttgagaagatcacaaaattcagtgtaatta 13783325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 19482643 - 19482717
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||| |||||||||||||||||  ||| ||  |||||||||||| || || ||||||||  ||||||||||||||    
T  19482643 gacacgacacagacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagt 19482717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 30298926 - 30298996
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaatt-acataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| || ||||||||||||| |||| | |||||||| |||||||||||||||    
T  30298926 gacacggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagt 30298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 30327794 - 30327864
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaatt-acataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| || ||||||||||||| |||| | |||||||| |||||||||||||||    
T  30327794 gacacggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagt 30327864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 34200348 - 34200297
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatt 72  Q
    |||||||||||| |||||||||  ||||||||||||||| ||||| ||||||||    
T  34200348 gacacagacacttacacatcga--ccgctaataatttgagaaaatcacataatt 34200297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 8423774 - 8423733
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  8423774 accgctaataatttgagaaaatcacataattcagtgtaatta 8423733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 20633471 - 20633531
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||| |||| |||||||||||||||| |||   |||||||| | |||||||||||||    
T  20633471 gacactgacacgtcgacaccgctaataatttgaaaaa---acataattcaatgtaattacaagt 20633531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 43241056 - 43240995
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataattta 74  Q
    |||||||||| |||||| ||||| |||  |||||||||||||| | ||||||| ||||||||    
T  43241056 ggacatgacatagacacggacacgtcggaaccgctaataatttaagaaaattatataattta 43240995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 16303317 - 16303261
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgg 103  Q
    ||||| ||||| ||||| | |||||||||||||||||||||| || || ||||||||    
T  16303317 taatattttgaaaaaatgatataatttagtgtaattacaagtgtcggtgtcgtgtgg 16303261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 24343515 - 24343551
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  24343515 taataatttgagaaaattacataattcagtgtaatta 24343551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 35952670 - 35952614
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||||||||||||||||| | |||||| | |||||||| | |||||||| ||||||    
T  35952670 gctaataatttgataaaatcatataattcaatgtaattatatgtatcagtgtcgtgt 35952614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 40179719 - 40179651
Alignment:
Q  15 acatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||| ||||||||||| | || |||  ||||| ||||| ||||| |||||||| ||||||||||    
T  40179719 acatgacacggacactgacacgttgacaccattaatagtttgaaaaaatcacataattcagtgtaatta 40179651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 5235955 - 5236030
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||| ||||||||||||||||| |||| |||||||||||||| | ||||||| |||||||||||||||||    
T  5235955 acattggacacgacacagacactgacacgtcgacaccgctaataatttaagaaaattatataatttagtgtaatta 5236030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 27945014 - 27945103
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||| |||||||||||  ||| ||| |||||||||||| |||||||||||||| ||||||||||||||| || || ||||||    
T  27945014 cggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgt 27945103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 11061166 - 11061086
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||| | ||||| |||||||||||| ||| || ||||||||||||| ||||| |||||||||||| |||||||||||    
T  11061166 acatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataattacaagt 11061086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 6028594 - 6028672
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    ||||| |||| ||||||||||||||||||||||||  | ||||||||||| || || |||||||||| |||||||||||    
T  6028594 acatcagacacgacacagacactgacacatcgatatggttaataatttgaaaatataacataatttaatgtaattacaa 6028672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 7328770 - 7328706
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||| | |||| ||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  7328770 gacacagacattaacacgtcgatactgctaataatttgagaaaataacataatttagtgtaatta 7328706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 13770660 - 13770740
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| ||||| |||||||| ||  ||| || ||||||||||| | |||||||||||||| |||||||||||||||    
T  13770660 acatcggacacgacacggacactgatacgccgacacagctaataatttaaaaaaattacataattcagtgtaattacaagt 13770740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 15902795 - 15902866
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| ||||||||||||||||   ||| |||  ||||||||||||||||| |||||||||||||||||||    
T  15902795 cggacacgacacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaatta 15902866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 4793835 - 4793892
Alignment:
Q  11 tcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacat 68  Q
    ||||||| ||||||||||||||||| ||||||| |||||||| |||| ||||||||||    
T  4793835 tcggacacgacacagacactgacacgtcgatacagctaataacttgaaaaaattacat 4793892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 9408409 - 9408344
Alignment:
Q  23 cagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||||| ||| ||   ||||||||||| ||||| ||||||||||||||||||||||||    
T  9408409 cagacactgacacaccgacacaattaataatttgaaaaaatcacataatttagtgtaattacaagt 9408344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 26733279 - 26733348
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||| ||||||||||| |||| |||||||||||||||| ||||| |||||||| ||| ||||||    
T  26733279 gacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaatta 26733348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 598183 - 598251
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    |||||||||| |||||||||||||||| |||||||||||||| | ||||| || ||||| | |||||||    
T  598183 gacatgacacggacactgacacatcgacaccgctaataatttaagaaaatcacgtaattaaatgtaatt 598251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 5233613 - 5233673
Alignment:
Q  23 cagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||| |||||| | ||||||||||| ||||| ||||||| |||||||||||    
T  5233613 cagacactgacacaccgatacggttaataatttgagaaaatcacataatctagtgtaatta 5233673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 17851423 - 17851475
Alignment:
Q  31 gacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||||||||||||||| | ||||| |||||||| ||||||||||    
T  17851423 gacacatcgataccgctaataattttagaaaatcacataattcagtgtaatta 17851475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 20549771 - 20549835
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| ||||||||||| ||| |||||||||||||||| ||||| || ||||| ||||||||||    
T  20549771 gacacatacactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaatta 20549835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 21880157 - 21880201
Alignment:
Q  44 cgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  21880157 cgctaataatttgagaaaattacataattcagtgtaattacaagt 21880201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 24105651 - 24105727
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||| || ||||||||||||| |||||| ||| ||| |||||||||||||||    
T  24105651 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattgcatgattcagtgtaattacaagt 24105727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 11831424 - 11831483
Alignment:
Q  31 gacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtat 90  Q
    |||||||||| ||  |||||||||||| ||||| | ||||||||||||||||||||||||    
T  11831424 gacacatcgacacaactaataatttgaaaaaatcatataatttagtgtaattacaagtat 11831483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 10042917 - 10042999
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| |||||| ||||  ||| ||| |||||||||||||||| | ||||||||||| ||||||| |||| ||||| ||||||    
T  10042917 gacacggacacttacacgccgacaccactaataatttgataaattcacataatttagcgtaattataagtgtcagtgtcgtgt 10042999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 28155573 - 28155619
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||    
T  28155573 accgctaataatttgagaaaattacataattcggtgtaattacaagt 28155619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 5409909 - 5409828
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggac 106  Q
    |||||||||||   ||||| ||||||||||||| ||||| |||||||| |||| |||||||||| || || |||||| ||||    
T  5409909 gacactgacacgctgatacagctaataatttgaaaaaatcacataattcagtgcaattacaagtgtcggtgtcgtgtcggac 5409828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 5954254 - 5954299
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagtatc 91  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||    
T  5954254 ctaataatttgaaaaaattacataatctagtgtaattacaaatatc 5954299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 8160419 - 8160460
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  8160419 accgctaataatttaagaaaattacataatttagtgtaatta 8160460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 12843225 - 12843172
Alignment:
Q  48 aataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||||||||||||||||||||||| | |||||||||| || ||||| ||||||    
T  12843225 aataatttgataaaattacataattcaatgtaattacatgtgtcagtgtcgtgt 12843172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 24339615 - 24339704
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||  |||| ||||||  ||| || ||||||||||||| ||||| |||||||| ||||||||||||||| || || ||||||    
T  24339615 cggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 24339704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 32308106 - 32308163
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    |||||||||||  ||| |||||||||||||||| ||||| |||||||| |||||||||    
T  32308106 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatt 32308163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 22484005 - 22484069
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||||  ||| |||||||||||||| | |||||| ||||||| ||| ||||||    
T  22484005 gacacagacactgacacgccgacaccgctaataattttagaaaattgcataattcagtataatta 22484069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 25481871 - 25481951
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||  |||  |||| ||||||  ||| || ||||||||||||| ||||| |||||||| |||||||||||||||    
T  25481871 acatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagt 25481951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 26033514 - 26033458
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||| || || ||||||    
T  26033514 gctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtctcgtgt 26033458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 30813818 - 30813858
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattaca 85  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  30813818 gctaataatttgagaaaattacataattcagtgtaattaca 30813858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 18215239 - 18215144
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggacgcctgaacacgcctaatctacggagtggccgtgc 140  Q
    ||||||||||||| ||||| |||||||  |||||| |||||||| || || ||||||  ||| || | |||||||||||||  |||||| ||||||    
T  18215239 gctaataatttgaaaaaatcacataatgcagtgtagttacaagtgtcggtgtcgtgtccgacaccgggacacgcctaatctgaggagtgtccgtgc 18215144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 21864775 - 21864857
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttg--ataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| ||||| ||||| ||||||  || || ||||||||||||  | ||||| | ||||||||||||||||||||||    
T  21864775 acatcggacacgacacggacacggacacacggacacagctaataatttgaaaaaaaatcatataatttagtgtaattacaagt 21864857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 1401011 - 1401077
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatc 91  Q
    |||||||||||   |||| |||||||||||||| ||| | |||||||| |||||||||| |||||||    
T  1401011 gacactgacacgctgatatcgctaataatttgagaaactcacataattcagtgtaattataagtatc 1401077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 42720963 - 42720905
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||| | || |||||||||||||||| ||||| |||||||| | ||||||||    
T  42720963 gacactgacacgttgacaccgctaataatttgaaaaaatcacataattaaatgtaatta 42720905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 22868023 - 22868100
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatc 97  Q
    |||| |||||||||||  ||| ||| |||||||| ||| ||||| |||||||| |||||||||| | || ||||||||    
T  22868023 acaccgacactgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattatatgtgtcagtatc 22868100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 23191882 - 23191951
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagt 94  Q
    |||||||| ||  ||| |||||||||||||||| ||||| ||||| || |||||||||||| || |||||    
T  23191882 gacactgatacgccgacaccgctaataatttgagaaaatcacatatttcagtgtaattacatgtttcagt 23191951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 27093469 - 27093428
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
T  27093469 accgctaataatttaagaaaatcacataatttagtgtaatta 27093428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 27184832 - 27184873
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
T  27184832 accgctaataatttaagaaaatcacataatttagtgtaatta 27184873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 27229360 - 27229308
Alignment:
Q  48 aataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||| || ||||||    
T  27229360 aataatttg-taaaatcacataatttagtgtaattataagtatcggtgtcgtgt 27229308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 29787425 - 29787384
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  29787425 accgctaataatttgagaaaatcacataattcagtgtaatta 29787384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 3938119 - 3938187
Alignment:
Q  15 acatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||| |||||||||||||||||    |||||||| | ||||| |||||||| | ||||||||    
T  3938119 acatgacacaggcactgacacatcgatactataaataatttaaaaaaatcacataattcaatgtaatta 3938187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 4008660 - 4008580
Alignment:
Q  2 acatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    ||||| ||||| || |||||||||| ||||||||   || |||  |||||||||||||||||||||| ||| | |||||||    
T  4008660 acatggacatcagatatgacacagaaactgacacgcagacacctttaataatttgataaaattacatgattcaatgtaatt 4008580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 4014052 - 4013972
Alignment:
Q  2 acatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    ||||| ||||| || |||||||||| ||||||||   || |||  |||||||||||||||||||||| ||| | |||||||    
T  4014052 acatggacatcagatatgacacagaaactgacacgcagacacctttaataatttgataaaattacatgattcaatgtaatt 4013972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 11722184 - 11722124
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatt 72  Q
    |||||| ||||| |||||||||||  ||| |||||||| ||||||| ||||| ||||||||    
T  11722184 cggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacataatt 11722124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 43027554 - 43027466
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| ||||| |||||||||||  |||  | ||||||||||||| ||||| |||||||  ||||||| ||||||| || || ||||||    
T  43027554 ggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatcacataatgcagtgtaaatacaagtgtcggtgtcgtgt 43027466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 43249966 - 43250042
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||| || | ||||||||||| ||||| |||||||  |||||||||| ||||    
T  43249966 cggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagt 43250042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 92793 - 92862
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagt 94  Q
    |||||||||||  ||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  92793 gacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgtcagt 92862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 39323244 - 39323313
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||| || |||| |||||||||||||||| |||||||||||||| |||||||||||||||    
T  39323244 gacacggacactgaaacgtcgacaccgctaataatttgacaaaattacataattcagtgtaattacaagt 39323313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 20539759 - 20539684
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| ||||| ||||||||||| |||| || ||||||||||||| ||||| | ||||||||||||||||||||||    
T  20539759 ggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagt 20539684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 23717999 - 23718070
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||| ||| | |||||||| ||||||||||    
T  23717999 cggacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaatta 23718070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 24105671 - 24105742
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||| ||| | |||||||| ||||||||||    
T  24105671 cggacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaatta 24105742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 4882774 - 4882706
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||| |||||||| |||||||||||||| |||||| ||||| | |||||| |||||||||||||||    
T  4882774 acacagatactgacacgtcgataccgctaattatttgaaaaaatgatataattcagtgtaattacaagt 4882706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 30404936 - 30404860
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| |||||||||||  ||| || | ||||||||||| ||||| |||||||| |||||||||||||||    
T  30404936 cggacatgacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaattacaagt 30404860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 36756436 - 36756341
Alignment:
Q  6 gaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||| | ||||||||||||||||| |||| ||  ||||||||||||  |||| |||||||| |||||||||| |||| || || ||||||    
T  36756436 gaacatcggatacgacacagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattataagtgtcggtgtcgtgt 36756341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 21091709 - 21091778
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagt 94  Q
    |||||||||||| ||| |||||||||||||| | ||||| ||||| || ||||||||||||||| |||||    
T  21091709 gacactgacacaccgacaccgctaataatttaagaaaataacatacttcagtgtaattacaagtgtcagt 21091778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 21374778 - 21374709
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||| ||||  ||| || ||||||||||||| |||||||||||||| |||||||||||||||    
T  21374778 gacacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagt 21374709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 23921236 - 23921297
Alignment:
Q  22 acagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||| |||||  ||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  23921236 acagacattgacaggtcgataccgttaataatttgagaaaattacataattcagtgtaatta 23921297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 6940235 - 6940313
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatc 97  Q
    ||||| |||||||||||  ||| || ||||||||||| | ||| |||||||||| ||||||||||||||| || |||||    
T  6940235 gacacggacactgacacgccgacacagctaataattttaaaaagttacataattaagtgtaattacaagtgtcggtatc 6940313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 18841065 - 18841023
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  18841065 ctaataatttgaaaaaattacataattaagtgtaattacaagt 18841023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 21782903 - 21782833
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||| |||||| ||||||||||  ||| || ||||||||||||| ||||| |||||||| ||||||||||    
T  21782903 ggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaatta 21782833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 31808063 - 31808121
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| ||| |||||||||||||| | ||||| |||||||| ||||||||||    
T  31808063 gacactgacacaccgacaccgctaataatttaacaaaatcacataattcagtgtaatta 31808121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 21616737 - 21616806
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||| ||||| |||||  ||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatta 21616806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 28412325 - 28412394
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||| |||||| |||| || | |||| ||||||||||||||||| |||||||| ||||||||||    
T  28412325 gacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcacataattcagtgtaatta 28412394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 30717609 - 30717540
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||| | ||| |  ||||||||||||| ||||| |||||||| |||||||||||||||    
T  30717609 gacacggacactgacaaaccgacaaagctaataatttgaaaaaatcacataattcagtgtaattacaagt 30717540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 42832343 - 42832286
Alignment:
Q  31 gacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||| |||||||||||||||| ||||||||||| || |||||||||| ||||    
T  42832343 gacacaccgacaccgctaataatttgagaaaattacatatttcagtgtaattataagt 42832286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 15909707 - 15909647
Alignment:
Q  23 cagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||  |||||| ||||| | ||||| |||||||||||||| ||||||||||    
T  15909707 cagacactgacacgccgatacagctaaaattttgagaaaattacataattcagtgtaatta 15909647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 30335424 - 30335464
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  30335424 ctaataatttgaaaaaatgacataatttagtgtaattacaa 30335464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 40361805 - 40361769
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40361805 taataatttgaaaaaattacataatttagtgtaatta 40361769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 14996308 - 14996233
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaatt-acataatttagtgtaattacaagt 88  Q
    |||||||||| ||||||||||   ||| || ||||||||||||| |||| | | ||||||||||||||||||||||    
T  14996308 gacatgacacggacactgacaagccgacacagctaataatttgaaaaaaatcatataatttagtgtaattacaagt 14996233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 31456697 - 31456638
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||||| | |||||||  ||||| |||||||||| |||||||||| ||||||    
T  31456697 accgctaataatttaagaaaattatgtaattcagtgtaattataagtatcagtttcgtgt 31456638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 34691863 - 34691820
Alignment:
Q  40 ataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||||||||||| | |||||| ||||||||||    
T  34691863 ataccgctaataatttgataaaatcatataattcagtgtaatta 34691820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 34714275 - 34714232
Alignment:
Q  40 ataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||||||||||| | |||||| ||||||||||    
T  34714275 ataccgctaataatttgataaaatcatataattcagtgtaatta 34714232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 21624246 - 21624316
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaatta-cataatttagtgtaattacaagt 88  Q
    |||||||||||||||||  ||| || ||||||||||| | |||| || ||||||| |||||||||||||||    
T  21624246 gacacagacactgacacgccgacacagctaataattttaaaaaaatagcataattcagtgtaattacaagt 21624316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 30527674 - 30527592
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| |||||||||||| | | || | ||||||||||| ||||| | ||||||||||||||||| | || || |||||||||    
T  30527674 gacactgacactgacacacccacactgttaataatttgagaaaatcatataatttagtgtaattatatgtgtcggtatcgtgt 30527592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 15972881 - 15972922
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||| ||||||||| |||| |||||||||||||||    
T  15972881 taataatttgaaaaaattacacaattcagtgtaattacaagt 15972922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 28677912 - 28677953
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  28677912 accgctaataatttgaaaaaatcacataattcagtgtaatta 28677953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 36281686 - 36281727
Alignment:
Q  40 ataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  36281686 ataccgttaataatttgagaaaatcacataatttagtgtaat 36281727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 36409683 - 36409642
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| ||||||||| ||||| |||||||||||||||||||    
T  36409683 accgctgataatttgaaaaaatcacataatttagtgtaatta 36409642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 37558957 - 37559026
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| || ||||||||||||  ||||| |||||||| | |||||||||||||    
T  37558957 gacacggacactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaattacaagt 37559026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 12941019 - 12940947
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    |||| ||||| ||||||||||| | || ||  |||||||||||| ||||| | |||||| |||||||||||||    
T  12941019 gacacgacacggacactgacacgttgacacaactaataatttgaaaaaatcatataattcagtgtaattacaa 12940947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 29970622 - 29970566
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    ||||||||||||| || |||||||||||||||| |||||  |||| || ||||||||    
T  29970622 gacactgacacattgacaccgctaataatttgagaaaatcgcatagttcagtgtaat 29970566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 33884020 - 33884100
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||| | ||| ||||| ||||||||||||||| ||| | | ||| ||||| |||| ||| |||||||||||||||    
T  33884020 acatcagacacggcactgacacagacacatcgataccgataaaattgtgagaaaatgacatgattcagtgtaattacaagt 33884100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 37411323 - 37411259
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||| ||||||   ||| |||||||||||||||| ||||| |||||||| ||||| ||||    
T  37411323 gacacagacgctgacatgccgacaccgctaataatttgagaaaatcacataattcagtgtgatta 37411259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 997 - 1076
Alignment:
Q  1 aacatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaa 80  Q
    |||||||||| || | | ||||||||| |||||||| ||| |||||||||||||||| |||||||||||||| |||||||    
T  997 aacatgaacaccgtatacgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaa 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 20145 - 20234
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||| |||| ||||||  ||| || ||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||    
T  20145 cggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt 20234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 6326383 - 6326302
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcag 93  Q
    |||||| ||||| |||||||||||  ||| | ||||| |||||||| |||||||||||||| ||||||||||||||| ||||    
T  6326383 cggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaattacataattcagtgtaattacaagtgtcag 6326302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 14674249 - 14674318
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| || ||||||||||||| ||||| ||||||||||||||||||||||||    
T  14674249 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattacaagt 14674318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 43001780 - 43001849
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| ||||||||||  |||| || ||||||||||||| |||||||||||||| |||||||||||||||    
T  43001780 gacacggacactgacatgtcgacactgctaataatttgaaaaaattacataattcagtgtaattacaagt 43001849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 5468057 - 5467993
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| |||||||||||| || |||||| ||||||||||||||||| |||||||| ||||||||||    
T  5468057 gacatagacactgacacgtcaataccgataataatttgataaaatcacataattcagtgtaatta 5467993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 27144443 - 27144507
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||||  ||| ||||||||||||||||  |||| |||||||||||||||||||    
T  27144443 gacacagacactgacacgccgacaccgctaataatttgaggaaatcacataatttagtgtaatta 27144507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 22013387 - 22013458
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| ||||| |||||||||||  ||| || ||||||||||||  |||||||||||||||||||||||||    
T  22013387 cggacacgacacggacactgacacgccgacacagctaataatttggaaaaattacataatttagtgtaatta 22013458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 12927628 - 12927698
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||| |||||||| |||||| ||| | |||||||||||||| ||||| | |||||||||||||||||    
T  12927628 ggacatgatacagacacggacacaccgacatcgctaataatttgagaaaatcatataatttagtgtaatta 12927698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 36838546 - 36838587
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  36838546 accgctaataatttgagaaaattacataatttagtgtaatta 36838587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 21191142 - 21191066
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| ||||||||||   ||| || ||||||||||||| ||||| |||||||| |||||||||||||||    
T  21191142 cggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagt 21191066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 23220954 - 23221022
Alignment:
Q  10 atcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgt 78  Q
    ||||||||||||| | |  ||||||  |||| |||||||||||||||||||||| ||||||||||||||    
T  23220954 atcggacatgacatatatgctgacatgtcgacaccgctaataatttgataaaatcacataatttagtgt 23221022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 27932238 - 27932282
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    |||||||||||||||| |||||||||||||| |||||||||||||    
T  27932238 accgctaataatttgagaaaattacataattcagtgtaattacaa 27932282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 39698527 - 39698603
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||||   || || ||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||    
T  39698527 gacactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt 39698603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 7175098 - 7175044
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataattt 73  Q
    ||||| |||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  7175098 gacacggacactgacacatcgacaccgttaataatttgagaaaatcacataattt 7175044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 21522723 - 21522797
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    |||||| ||||| |||||||||||  ||| || ||||||||||| | ||||| |||||||| |||||||||||||    
T  21522723 cggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaa 21522797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 21533289 - 21533363
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    |||||| ||||| |||||||||||  ||| || ||||||||||| | ||||| |||||||| |||||||||||||    
T  21533289 cggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaa 21533363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 41633716 - 41633782
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    ||||||| ||||||||  ||| || ||||||||||||| ||| |||||||||| |||||||||||||    
T  41633716 acacagatactgacactccgacacagctaataatttgaaaaatttacataattcagtgtaattacaa 41633782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 42488132 - 42488066
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattaca 85  Q
    ||||||||||||||||| |||| |||| | ||||||| ||||||||| |||||| | ||||||||||    
T  42488132 gacacagacactgacacgtcgacaccgttgataatttaataaaattatataattcaatgtaattaca 42488066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 13287485 - 13287396
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||| |||||| |||| |||| || | ||||||||||| ||||| |||||||| ||||||| ||||||| || || ||||||    
T  13287485 cggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggtgtcgtgt 13287396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 19438329 - 19438386
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    |||||||||||||||| | |||| ||||||||| ||||| |||||||| |||||||||    
T  19438329 gacactgacacatcgacatcgctgataatttgagaaaatcacataattcagtgtaatt 19438386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 19579682 - 19579763
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||| |||||||| ||  ||| || ||||||||||||| ||||| ||||||||||||| |||||||||| || || ||||||    
T  19579682 acacggacactgatacgccgacacagctaataatttgagaaaatcacataatttagtgcaattacaagtgtcggtgtcgtgt 19579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 26205846 - 26205777
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    |||||||||||  ||||||||||| ||||||||| ||| | ||||| ||||| |||||||| ||||||||    
T  26205846 cggacatgacatggacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaat 26205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 21576798 - 21576755
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  21576798 gctaataatttgaaaaaatcacataattcagtgtaattacaagt 21576755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 24906352 - 24906301
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaattacaagtatcagtatcg 98  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| || ||||||    
T  24906352 taataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtatcg 24906301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 31084309 - 31084372
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||  ||| || ||||||||||||| ||||| |||||||| | |||||||||||||    
T  31084309 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagt 31084372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 42893346 - 42893409
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||| ||| || ||||||||||||| ||||| |||||||  |||||||||||||||    
T  42893346 gacacggacacaccgacacagctaataatttgaaaaaatcacataatccagtgtaattacaagt 42893409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 6247629 - 6247671
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| ||||| |||||||| |||||||||||||||    
T  6247629 ctaataatttgaaaaaatcacataattcagtgtaattacaagt 6247671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 19168900 - 19168838
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    ||||| |||||||||||| | | ||||||| |||||||||||||| |||| ||| ||||||||    
T  19168900 gacacggacactgacacacctacaccgctattaatttgataaaatcacattattcagtgtaat 19168838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 33178032 - 33178074
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| | ||||| ||||||||||||||||||||||||    
T  33178032 ctaataatttaaaaaaatcacataatttagtgtaattacaagt 33178074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 14422877 - 14422951
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||  |||||||||||| |||||| |||||||||||   ||||| |||||||| |||||||||| ||||    
T  14422877 cggacacgacaaggacactgacacaccgatacagctaataattt--aaaaatcacataattcagtgtaattataagt 14422951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 15410538 - 15410465
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaat 81  Q
    ||||| |||| ||||| |||||||||||  ||| |||||||||||||| | ||||||| || ||| ||||||||    
T  15410538 acatcagacacgacacggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaat 15410465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 35017044 - 35017081
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  35017044 ctaataatttgagaaaatcacataatttagtgtaatta 35017081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 16203878 - 16203810
Alignment:
Q  15 acatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||| |||||| |||   ||| || ||||||||||||| |||||  ||||||||||||||||||    
T  16203878 acatgacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaatta 16203810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 26609323 - 26609391
Alignment:
Q  9 catcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtg 77  Q
    ||||||| | |||| | ||| ||||||| ||| ||| |||||||||||||||||| |||| ||||||||    
T  26609323 catcggaaacgacataaacattgacacaccgacaccactaataatttgataaaatcacatgatttagtg 26609391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 7105 - 7042
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||| || |||| || ||||||||||||| |||||||||||||||||| |||||||||||    
T  7105 gacactgatacgtcgacacagctaataatttgaaaaaattacataatttagtataattacaagt 7042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 11665917 - 11665988
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| |||||| ||||| ||||| ||| | |||||||||||||||||||| ||| |||||||||||||||    
T  11665917 cggacacgacacacacactaacacaccgacaacgctaataatttgataaaatcacacaatttagtgtaatta 11665988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 14829653 - 14829751
Alignment:
Q  2 acatgaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| ||| ||||||||||||||||||||||||  ||| || ||||||||||||| ||||| |||||||| |  |||||||||||| || || ||||||    
T  14829653 acatggacaccggacatgacacagacactgacacgccgacacagctaataatttga-aaaatcacataattcatggtaattacaagtgtcggtgtcgtgt 14829751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 25064882 - 25064953
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| |||||||||| ||||||  ||| ||||||||| |||||| ||||| |||||||||||||||||||    
T  25064882 cggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcacataatttagtgtaatta 25064953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 4991046 - 4990977
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| || ||||||||  ||| |||||||||| ||||| |||||||||||||| |||||||||||||||    
T  4991046 gacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaattacaagt 4990977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 10268559 - 10268490
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagt 94  Q
    |||||||||||  ||| || | ||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  10268559 gacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgtaattacaagtgtcagt 10268490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 8587107 - 8587031
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| |||||||||||  ||| ||  ||| |||||||| ||||| |||||||| |||||||||||||||    
T  8587107 cggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatcacataattaagtgtaattacaagt 8587031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 1509545 - 1509588
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  1509545 gctaataatttgaaaaaatcacataatttagtgtaattacaagt 1509588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 16192840 - 16192765
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||| ||||  | |||||| ||| |||| ||||||||||| ||||| |||||||| ||||||||||    
T  16192840 acatcggacatgactcagatgccgacacaccgacaccgttaataatttgagaaaataacataattcagtgtaatta 16192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 4987363 - 4987301
Alignment:
Q  26 acactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||  ||| || ||||||||||||| ||||| |||||||| |||||||||||||||    
T  4987363 acactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagt 4987301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 34307872 - 34307790
Alignment:
Q  6 gaacatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| ||||||||||||||||||  ||||   || |||||||||||||||| ||||| ||||| || |||||||||| ||||    
T  34307872 gaacaccggacatgacacagacacgaacacgctgacaccgctaataatttgagaaaatcacatatttcagtgtaattataagt 34307790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 55401082 - 55401124
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  55401082 ctaataatttgaaaaaatcacataatttagtgtaattacaagt 55401124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 17568734 - 17568693
Alignment:
Q  47 taataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  17568734 taataatttgagaaaattacataatttaatgtaattacaagt 17568693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 25948966 - 25948897
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| ||||||||||   |||||| ||||||||||||| ||||| |||||||| |||||||||| ||||    
T  25948966 gacacggacactgacatgccgatacggctaataatttgaaaaaatcacataattcagtgtaattataagt 25948897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 49505210 - 49505169
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  49505210 accgctaataatttgagaaaatcacataatttagtgtaatta 49505169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 26508083 - 26508159
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| || ||||| ||||||||   || || ||||||||||||| ||||| |||||||| |||||||||||||||    
T  26508083 cggacacgatacagatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagt 26508159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 28917974 - 28918050
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| || ||||||||  ||| |  ||||||||||||| ||||| |||||||| |||||||||||||||    
T  28917974 cggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaattacaagt 28918050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 8383231 - 8383306
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| ||||| |||| ||||||  ||| |||||||||||||||| ||||| | |||||| |||||||||| ||||    
T  8383231 ggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagt 8383306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 14209120 - 14209175
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||||||| | ||||| |||||||| ||||||||||||||| ||||| ||||||    
T  14209120 ctaataattttaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt 14209175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 14747547 - 14747610
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaatt-acataatttagtgtaattacaag 87  Q
    |||||||||||  ||| || ||||||||||||| |||| | |||||||||||||||||||||||    
T  14747547 gacactgacacgccgacacagctaataatttgaaaaaaatcacataatttagtgtaattacaag 14747610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 14832098 - 14832161
Alignment:
Q  38 cgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||||| ||||||||||||| ||||| |||||| | | ||||||||||||| ||||| ||||||    
T  14832098 cgatacagctaataatttgaaaaaatcacataactcaatgtaattacaagtgtcagtgtcgtgt 14832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 15544679 - 15544726
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatt 72  Q
    ||||||||||| | || |||||||||||||||||||||| ||||||||    
T  15544679 gacactgacacgttgacaccgctaataatttgataaaatcacataatt 15544726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 21257039 - 21256984
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtg 100  Q
    ||||||||||||| ||||| |||||||| ||| ||||||||||| || ||||||||    
T  21257039 gctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtatcgtg 21256984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 26492291 - 26492212
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatc 91  Q
    |||||| ||||| |||||||||||  ||| |  ||||||||||||| ||||| | | |||| ||||||||||||||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaataatttgaaaaaatcatacaattcagtgtaattacaagtatc 26492212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 11313853 - 11313815
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  11313853 gctaataatttgagaaaatcacataatttagtgtaatta 11313815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 27277891 - 27277853
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  27277891 gctaataatttgagaaaatcacataatttagtgtaatta 27277853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 29508430 - 29508488
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||||| ||||||| |||||||||||| ||||| | |||||| ||||||||||    
T  29508430 gacattgacacaccgataccactaataatttgaaaaaatcatataattcagtgtaatta 29508488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 7928453 - 7928494
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  7928453 accgctaataatttgaaaaaatcacataattcagtgtaatta 7928494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 8039891 - 8039850
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||||||||||||| ||||||| |||||| ||||||||||    
T  8039891 accgctaataatttgagaaaattatataattcagtgtaatta 8039850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 9800014 - 9800083
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatt 82  Q
    ||||| |||||  ||||||||||  ||| ||| |||||||||||| ||||||||||||||  ||||||||    
T  9800014 ggacacgacacgtacactgacacgccgacacctctaataatttgagaaaattacataattccgtgtaatt 9800083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 16000095 - 16000026
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||||||||  ||| ||  |||||||||| | ||||| |||||||| ||||||| |||||||    
T  16000095 gacacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaactacaagt 16000026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 32804596 - 32804555
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  32804596 accgttaataatttgagaaaatcacataatttagtgtaatta 32804555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 34910324 - 34910365
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaag 87  Q
    |||||||||||| ||||| |||||||| ||||||||||||||    
T  34910324 ctaataatttgaaaaaatcacataattcagtgtaattacaag 34910365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 49651839 - 49651778
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggac 106  Q
    ||||||||||||| ||||| |||||||| | ||||||||||||| || || |||||| ||||    
T  49651839 gctaataatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgtcggac 49651778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 3164111 - 3164043
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaa 80  Q
    |||||| ||||| |||| || ||| |||| || ||||||||||||| ||||| |||||||| |||||||    
T  3164111 cggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattcagtgtaa 3164043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 5441117 - 5441057
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatt 72  Q
    |||||| |||||||||||||||||  ||  |||||||| ||||||| ||||| ||||||||    
T  5441117 cggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcacataatt 5441057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 10335372 - 10335296
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||| ||  |||||||||||| ||| | ||||| |||||||||| |||||||    
T  10335372 cggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacatattttagtgtaaatacaagt 10335296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11610502 - 11610570
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||||| ||||||||  | | |||||||||||||| | ||||| |||||||| |||||| ||||||||    
T  11610502 acacagatactgacacgccaacaccgctaataatttaaaaaaatcacataattcagtgtagttacaagt 11610570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 12083910 - 12083958
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagtatcagt 94  Q
    ||||||| |||| |||| ||||||||| ||||||||||||||| |||||    
T  12083910 ctaataaattgagaaaactacataattcagtgtaattacaagtgtcagt 12083958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 20503474 - 20503514
Alignment:
Q  48 aataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| ||||| |||||||| |||||||||||||||    
T  20503474 aataatttgaaaaaatgacataattcagtgtaattacaagt 20503514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 24205127 - 24205051
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||| || | ||||||||||| ||||| |||||||  |||||||||| ||||    
T  24205127 cggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagt 24205051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 51791 - 51860
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    ||||| |||||||||||  ||| || ||||||||||||| ||||| |||||||| |||||||||||||||    
T  51791 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagt 51860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 19549 - 19624
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||||||  |||||||||||| ||||| |||||||| |||||||||||||||    
T  19549 cggacacgacactgacactgacacgccgatacaactaataatttga-aaaatcacataattcagtgtaattacaagt 19624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 8771 - 8847
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||| ||||| |||||||||||  ||| || ||||||||||||| ||||| | || |||||||||||||||||||    
T  8771 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaattacaagt 8847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 192322 - 192259
Alignment:
Q  25 gacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||  ||| |||| ||||||||||| ||||||||||||||  ||||||||||||||    
T  192322 gacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaattacaagt 192259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 178905 - 178822
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaatta-cataatttagtgtaattacaagtatcagt 94  Q
    |||||| ||||| |||||||||||  ||| ||  |||||||||||| ||||| | ||||||| ||||||||||||||| |||||    
T  178905 cggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcatcataattcagtgtaattacaagtgtcagt 178822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 241567 - 241638
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    |||||| ||||| |||||||||||  ||| || ||||||||||||  ||||| |||||||||||||||||||    
T  241567 cggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaatta 241638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 2948 - 2990
Alignment:
Q  59 aaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  2948 aaaatcacataatttagtgtaattacaagtatcagtgtcgtgt 2990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 63776 - 63822
Alignment:
Q  42 accgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||||    
T  63776 accgctaataatttgagaaaattacataattcagtgcaattacaagt 63822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 46651 - 46729
Alignment:
Q  8 acatcggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    |||||||||| ||||| |||| ||||||  ||| || | ||||||||||| ||||| |||||||| |||||||||||||    
T  46651 acatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaattacaa 46729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 17801 - 17759
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  17801 ctaataatttgaaaaaatcacataatttagtgtaattacaagt 17759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 13373 - 13448
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaag 87  Q
    |||| ||||||| |||||||||||  ||| ||  |||||||||||| ||||| |||||||| |||| |||||||||    
T  13373 cggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaattacaag 13448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 21954 - 21879
Alignment:
Q  12 cggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaag 87  Q
    |||| ||||||| |||||||||||  ||| ||  |||||||||||| ||||| |||||||| |||| |||||||||    
T  21954 cggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaattacaag 21879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 3933 - 3846
Alignment:
Q  14 gacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    |||| |||||||||||||| |   ||| || | ||||||||| | ||||| |||||||| ||||||||||||||| ||||| ||||||    
T  3933 gacacgacacagacactgatatgccgacacggttaataatttaaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt 3846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 14537 - 14579
Alignment:
Q  46 ctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||||| ||||| |||||||| |||||||||||||||    
T  14537 ctaataatttgaaaaaatcacataattcagtgtaattacaagt 14579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 90817 - 90887
Alignment:
Q  13 ggacatgacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaatta 83  Q
    ||||| |||||||||||||||||| | | |||  ||||||||||| ||||| | |||||| ||||||||||    
T  90817 ggacacgacacagacactgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaatta 90887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 135391 - 135285
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgtgggacgcctgaacacgc 118  Q
    |||||||||||  ||||| ||| || ||||||||||||| ||||| ||||||||  ||||||||| | || || || ||||||  ||| || | ||||||    
T  135391 gacacagacaccaacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcgtgtccgacaccaggacacgc 135292  T
Q  119 ctaatct 125  Q
    |||||||    
T  135291 ctaatct 135285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 263451 - 263369
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagtatcagtatcgtgt 101  Q
    ||||| ||||||||||  || | || ||||||||||||| ||||  |||||||| |||||||||| |||| ||||| ||||||    
T  263451 gacacggacactgacatgtcaacactgctaataatttgagaaaaccacataattcagtgtaattataagtgtcagtgtcgtgt 263369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 8132 - 8071
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaa 80  Q
    ||||| ||||| ||||| ||||||| | ||||||||||| ||||| |||||||| |||||||    
T  8132 gacacggacaccgacacgtcgatacggataataatttgagaaaatgacataattcagtgtaa 8071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 26373 - 26426
Alignment:
Q  19 gacacagacactgacacatcgataccgctaataatttgataaaattacataatt 72  Q
    |||||||||| |||||| |||| ||| |||||||||||| ||||| ||||||||    
T  26373 gacacagacagtgacacgtcgacaccactaataatttgagaaaatcacataatt 26426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 33416 - 33375
Alignment:
Q  45 gctaataatttgataaaattacataatttagtgtaattacaa 86  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  33416 gctaataatttgaaaaaataacataattcagtgtaattacaa 33375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 70259 - 70327
Alignment:
Q  20 acacagacactgacacatcgataccgctaataatttgataaaattacataatttagtgtaattacaagt 88  Q
    |||||||||| ||||  |||| || | ||||||||||| ||||| |||||||| |||||||||| ||||    
T  70259 acacagacacagacatgtcgacacagttaataatttgaaaaaataacataattcagtgtaattataagt 70327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University