View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10255_3 (Length: 366)
Name: NF10255_3
Description: NF10255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10255_3 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 298
Target Start/End: Original strand, 50763053 - 50763326
Alignment:
| Q |
25 |
aacttgtcattcgctaagtcaaatagctttttaaacctgtaacgcaaatcattaccctctagccagtgattggttattatctctgatgcttctgagattc |
124 |
Q |
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| T |
50763053 |
aacttgtcattcgctaagtcaaatagctttttaaacctgtaacgcaaatcattaccctctagtcagtgattggttattatctgtgatgcttctgagattc |
50763152 |
T |
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| Q |
125 |
tttgcgaagtgtataacattgttcttttnnnnnnngttggacacaaaactgtgaaactgttgtttcttctttatttcctatacaaatctttaaaaatacg |
224 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |
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| T |
50763153 |
tttgcgaagtgtataacattgttcttttaaaaaaagttggacacaaaactgtgaaaccgttgtttcttctttatttcctatacaaaactttaaaaatatg |
50763252 |
T |
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| Q |
225 |
aaacacattgaaaataagatttgtaattaaaagtgaaaatagaatatttcacaaaacaactagacccttccctt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50763253 |
aaacacattgaaaataagatttgtaattaaaagtgaaaatagaatatttcacaaaacaattagacccttccctt |
50763326 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 30623858 - 30623894
Alignment:
| Q |
208 |
aaatctttaaaaatacgaaacacattgaaaataagat |
244 |
Q |
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| T |
30623858 |
aaatctttaaaaatacgaagcaaattgaaaataagat |
30623894 |
T |
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