View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10255_4 (Length: 354)

Name: NF10255_4
Description: NF10255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10255_4
NF10255_4
[»] chr4 (11 HSPs)
chr4 (1-348)||(23451502-23451849)
chr4 (1-62)||(26434185-26434246)
chr4 (1-62)||(26435965-26436026)
chr4 (1-62)||(26832896-26832957)
chr4 (1-62)||(23402235-23402296)
chr4 (1-62)||(23408596-23408657)
chr4 (1-62)||(23885988-23886049)
chr4 (1-62)||(23415765-23415826)
chr4 (1-62)||(23453428-23453489)
chr4 (1-62)||(24307384-24307445)
chr4 (1-61)||(23868893-23868953)
[»] chr7 (1 HSPs)
chr7 (1-61)||(47317443-47317503)
[»] chr2 (1 HSPs)
chr2 (93-152)||(14715554-14715614)
[»] chr1 (1 HSPs)
chr1 (1-61)||(33216606-33216666)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 23451849 - 23451502
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagtttacaagttcttaaacttgaaactatgtcgtggttgt 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  23451849 caatcacttcaagggaaattcagaccgcagtcaggcttgttctgcccggtgaattggccaagtttacaagttcttaaacttgaaactatgtcgtcgctgt 23451750  T
Q  101 tttggagttcttgtttactggattgttagtttaagcaccattagacttttaaattctttaaattttaccttttcaaagctgttatgaactaatgggatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23451749 tttggagttcttgtttactggattgttagtttaagcaccattagacttttaaattctttaaattttaccttttcaaagctgttatgaactaatgggatct 23451650  T
Q  201 actcgatccccctagtgtattataatgctggaattaatgaaaattatgatttgaaaatgtgtcttgcacaatatatttgaaggaatctatgaaccagagt 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23451649 actcgatcccccttgtgtattataatgctggaattaatgaaaattatgatttgaaaatgtgtcttgcacaatatatttgaaggaatctatgaaccagagt 23451550  T
Q  301 tagccaatactgaacacttattcttaacaaaaaattaatattcttgga 348  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  23451549 tagccaagactgaacacttattcttaacaaaaaattaatattattgga 23451502  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26434185 - 26434246
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26434185 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 26434246  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26435965 - 26436026
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26435965 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 26436026  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26832896 - 26832957
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26832896 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 26832957  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23402235 - 23402296
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    ||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||    
T  23402235 caatcacttcaagggaaattcagactgcagtcaggcttgttcttcctggtgaattggccaag 23402296  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23408657 - 23408596
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    |||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||    
T  23408657 caatcacttcaagggaaattcagaccgcggtcagacttgttcttcctggagaattggccaag 23408596  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23885988 - 23886049
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    ||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||    
T  23885988 caatcacttcaagggaaattcagactgcagtcaggcttgttcttcctggtgaattggccaag 23886049  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23415826 - 23415765
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    ||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||    
T  23415826 caatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaag 23415765  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23453489 - 23453428
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    ||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||    
T  23453489 caatcacttcaagggaaattcagactgcagtcagtcttgttcttcctggtgaattggccaag 23453428  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24307384 - 24307445
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaag 62  Q
    ||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||    
T  24307384 caatcacttcaagggaaattcagactgctgtcagacttgttcttcctggtgaattggccaag 24307445  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23868893 - 23868953
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaa 61  Q
    ||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||    
T  23868893 caatcacttcaagggaaattcagactgctgtcagacttgttcttcctggtgaattggccaa 23868953  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47317443 - 47317503
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaa 61  Q
    |||||||||||||||||||||| || |  ||||| ||| |||| || ||||||||||||||    
T  47317443 caatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaa 47317503  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 14715554 - 14715614
Alignment:
Q  93 gtggttgttttggagttcttgtttactggattgtta-gtttaagcaccattagacttttaa 152  Q
    |||||||||||| |||||||| || |||||| |||| ||| ||||||||||||| ||||||    
T  14715554 gtggttgttttgaagttcttgcttgctggatcgttatgttgaagcaccattagatttttaa 14715614  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33216606 - 33216666
Alignment:
Q  1 caatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaa 61  Q
    |||||||||||||| ||||||| || || ||||| |||||||| |  ||||||||||||||    
T  33216606 caatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaa 33216666  T

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