View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10255_low_1 (Length: 278)
Name: NF10255_low_1
Description: NF10255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10255_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 27689790 - 27689540
Alignment:
| Q |
18 |
attagttttccctttcatgggccatggccatacaatacctaccattgatatggccaaactatttgcttcaaaaggtgttagggttaccatagtcaccaca |
117 |
Q |
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| T |
27689790 |
attagttttccctttcatgggccatggccatacaatacctaccattgatatggccaaactatttgcttcaaaaggtgttagggttaccatagtcaccaca |
27689691 |
T |
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| Q |
118 |
cccctcaacaaacctcccatctccaaagccctagaacaatccaaaatccattttaacaatatagatattcaaaccatcaagttcccttgtgtagaggcag |
217 |
Q |
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| T |
27689690 |
cccctcaacaaacctcccatctccaaagccctagaacaatccaaaatccattttaacaatatagatattcaaaccatcaagttcccttgtgtagaggcag |
27689591 |
T |
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| Q |
218 |
gtttacctgaaggatgtgagaatgttgattcaatcccttcagtttcctttg |
268 |
Q |
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| T |
27689590 |
gtttacctgaaggatgtgagaatgttgattcaatcccttcagtttcctttg |
27689540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 264
Target Start/End: Original strand, 18988669 - 18988821
Alignment:
| Q |
112 |
accacacccctcaacaaacctcccatctccaaagccctagaacaatccaaaatccattttaacaatatagatattcaaaccatcaagttcccttgtgtag |
211 |
Q |
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| T |
18988669 |
accacactcctcaacaaaccttcaatttcaagatccatagaacaattcaaaatccattttaataacatcgatatccaaaccatcaagttcccttgtgtag |
18988768 |
T |
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| Q |
212 |
aggcaggtttacctgaaggatgtgagaatgttgattcaatcccttcagtttcc |
264 |
Q |
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| T |
18988769 |
agggtggtttaccttatggctgtgaaaatgttaatgcaatccctacagtttcc |
18988821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 52 - 264
Target Start/End: Complemental strand, 33391980 - 33391768
Alignment:
| Q |
52 |
atacctaccattgatatggccaaactatttgcttcaaaaggtgttagggttaccatagtcaccacacccctcaacaaacctcccatctccaaagccctag |
151 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| | | || | | || ||| |
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| T |
33391980 |
atacccaccattgatatggccaaaatatttgcttcaaaaggtgttaaggctaccatagttaccacacccctcaacaaacctttcttttcaagatccatag |
33391881 |
T |
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| Q |
152 |
aacaatccaaaatccattttaacaatatagatattcaaaccatcaagttcccttgtgtagaggcaggtttacctgaaggatgtgagaatgttgattcaat |
251 |
Q |
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|||||| ||||||||||||||| || || ||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| |
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| T |
33391880 |
aacaattcaaaatccattttaataacatcgatatccaaaccatcaagttcccttgtgtagagggtggtttacctgaagggtgtgaaaatgttgatgcaat |
33391781 |
T |
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| Q |
252 |
cccttcagtttcc |
264 |
Q |
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|||| || ||||| |
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| T |
33391780 |
ccctacaatttcc |
33391768 |
T |
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