View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10256_1 (Length: 534)
Name: NF10256_1
Description: NF10256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10256_1 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 17889924 - 17889450
Alignment:
| Q |
1 |
actatacctactcacacatcacattgcaaattccaatcatgaaatcccagtaatcttctcaaggtaccaaacactttctgatcactctcttgtcaccctt |
100 |
Q |
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| T |
17889924 |
actatacttactcacacatcacattgcaaattccaatcatgaaatcccattaatcttccaaaggtaccaaacactttctgatcactctcttgtcaccctt |
17889825 |
T |
|
| Q |
101 |
ggtgacttatttcactacatgttagagctcaagtcgcggcttccccgtgaaacatgcattggttccatcaacacaaacgccttagtcgaaacaaattgtc |
200 |
Q |
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| T |
17889824 |
ggtgacttatttcactacatgttagagctcaagtcgcggcttccccgtgaaacatgcattggttccttcaacacaagcgccttagtcgaaacaaattgtc |
17889725 |
T |
|
| Q |
201 |
gttggtcccctaaaaggattgaaatggcaacacgggtcattgtcgaggccttaaaaagaactgaattcagatggatttcaagacaagaagtgagagatgc |
300 |
Q |
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| T |
17889724 |
gttggtcccctaaaaggattgaaatggcaacacgggtcattgtcgaggccttaaaaagaactgaattcaggtggatttcaagacaagaagtgagagatgc |
17889625 |
T |
|
| Q |
301 |
cgcacgtgcttatattggagacactggtttgttggattttgttttgaagtcgctaggaaaccacgttgttggaaactatttggttcgtcgaagcttgaat |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17889624 |
cgcgcgtgcttatattggagacactggtttgttggattttgttttgaagtcgctaggaaaccacgttgttggaaactatttggttcgtcgaagcttgaat |
17889525 |
T |
|
| Q |
401 |
ccagttacaaaagtgttggagtattgtttagaagacatttctaatgtttacccttgtcatgaagggttggttatg |
475 |
Q |
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| T |
17889524 |
ccggttacaaaagtgttggagtattgtttagaagacatttctaatgtttacccttgtcatgaagggttggttatg |
17889450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 534
Target Start/End: Complemental strand, 17889433 - 17889394
Alignment:
| Q |
495 |
ataaagttaaggacaagtacaagatcacaagggggcaact |
534 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
17889433 |
ataaagttaaggacaagtacaagatcacaagggggcaact |
17889394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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