View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10256_2 (Length: 436)
Name: NF10256_2
Description: NF10256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10256_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Original strand, 45560679 - 45561098
Alignment:
| Q |
17 |
tcaaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgcaattagactttataaataatag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45560679 |
tcaaaaacatctcattgtttgacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgcaattagactttataaataatag |
45560778 |
T |
|
| Q |
117 |
gttcactggcaacctcccacccaatctttgttttcgcagaaagctaagcgttttgaatatgggcatcaatcaacttcaaggtagcatacctcttgatgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45560779 |
gttcactggcaacctcccacccaatctttgttttcgcagaaagctaagcgttttgaatatgggcatcaatcaacttcaaggtagcatacctcttgatgtt |
45560878 |
T |
|
| Q |
217 |
ggaagatgcacaactctaagaagggtcattcttaaacaaaacaactttactgggcctcttcctgatttcaaaaccaatcccaatctgttattcatggaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45560879 |
ggaagatgcacaactctaagaagggtcattcttaaacaaaacaactttactgggcctcttcctgatttcaaaaccaatcccaatctgttattcatggaga |
45560978 |
T |
|
| Q |
317 |
tcagcaacaacaaaatcaacggaacaattccatcaagtttaggaaactgcacaaatctaacagatttaattttgtcaacgaacaaatttagtgggcgtat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45560979 |
tcagcaacaacaaaatcaacggaacaattccatcaagtttaggaaactgcacaaatctaacagatttaattttgtcaacgaacaaatttagtgggcttat |
45561078 |
T |
|
| Q |
417 |
accacaagagttaggaaacc |
436 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45561079 |
accacaagagttaggaaacc |
45561098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 37841706 - 37842055
Alignment:
| Q |
25 |
atctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgcaattagactttataaataataggttcactg |
124 |
Q |
| |
|
|||||||||||| | || | |||||| ||||||||||||||||||||||||||||| |||||| | || | || |||| ||| ||||| | ||||| || |
|
|
| T |
37841706 |
atctcattgtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgtatgaataacaagttcaatg |
37841805 |
T |
|
| Q |
125 |
gcaacctcccacccaatctttgttttcgcagaaagctaagcgtt----ttgaatatgggcatcaatcaacttcaaggtagcatacctcttgatgttggaa |
220 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||| | ||| | |||||||| ||||||||||| |||||| |||||||| |||| |||||| |
|
|
| T |
37841806 |
gcaatatcccacccaatctttgcttt---ggaaagc-atttgttagagctcaatatgggaatcaatcaactacaaggtggcataccttctgatcttggaa |
37841901 |
T |
|
| Q |
221 |
gatgcacaactctaagaagggtcattcttaaacaaaacaactttactgggcctcttcctgatttcaaaaccaatcccaatctgttattcatggagatcag |
320 |
Q |
| |
|
||||| |||||||||| ||| | |||| || ||||| || || || ||| | ||||||||||| || |||| || ||| || |||||| || || |
|
|
| T |
37841902 |
gatgcgcaactctaaggaggttgtttctcaatcaaaataatttcaccgggtcgcttcctgattttgcaagtaatcttaacctgaaatacatggacataag |
37842001 |
T |
|
| Q |
321 |
caacaacaaaatcaacggaacaattccatcaagtttaggaaactgcacaaatct |
374 |
Q |
| |
|
||| ||||| |||| ||| |||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
37842002 |
caagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatct |
37842055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 26640830 - 26640769
Alignment:
| Q |
25 |
atctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcag |
86 |
Q |
| |
|
|||||||||||| |||| | |||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
26640830 |
atctcattgtttgacaatcagttctcaggaggcatacctcaaagcttgggaatcaacagcag |
26640769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 37830384 - 37830444
Alignment:
| Q |
26 |
tctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcag |
86 |
Q |
| |
|
||||||||||| | || | |||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37830384 |
tctcattgtttgaaaatcagttctcaggagtcatacctcaaagcttgggaatcaacagcag |
37830444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 37836081 - 37836148
Alignment:
| Q |
19 |
aaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcag |
86 |
Q |
| |
|
||||| |||||||||||| | || | |||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
37836081 |
aaaaatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttaggaatcaacagcag |
37836148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 37849456 - 37849523
Alignment:
| Q |
19 |
aaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcag |
86 |
Q |
| |
|
||||| |||||||||||| | || | |||||| ||||||| |||||||||||||||||| || ||||| |
|
|
| T |
37849456 |
aaaaatatctcattgtttgataatcagttctcaggagtcacacctcaaagcttgggaataaacagcag |
37849523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 37836234 - 37836286
Alignment:
| Q |
172 |
aatatgggcatcaatcaacttcaaggtagcatacctcttgatgttggaagatg |
224 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||| | |||||||| |
|
|
| T |
37836234 |
aatatgggaatcaatcaacttcaaggtggcataccttctgatctaggaagatg |
37836286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 40540716 - 40540794
Alignment:
| Q |
17 |
tcaaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgca |
95 |
Q |
| |
|
|||| ||||| |||||||||||||||| || |||||||| |||||||||| ||| ||||| |||||||||||| |||| |
|
|
| T |
40540716 |
tcaagaacatttcattgtttaacaaccaattttctggagttatacctcaaaccttaggaattaatagcagtttggtgca |
40540794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University