View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10256_3 (Length: 388)
Name: NF10256_3
Description: NF10256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10256_3 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 55452395 - 55452001
Alignment:
| Q |
13 |
aaaatatgtggagcgcacattgccatggacatggagtattaccaggccaatcacatgcaaaacgagtatnnnnnnn-ttaatatcaaggtaacgaattga |
111 |
Q |
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| T |
55452395 |
aaaatatgtggagcgcacattgccatggacatggagtattaccaggccaatcacatgcaaaacgagtataaaaaaaattaatatcaaggtaacgaattga |
55452296 |
T |
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| Q |
112 |
aatgagaaatgatcacaaacaagctagctaatggaaataaataaatttatctgcacaaacattgtttacatacctctcctacgtaccgttgcatttttgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55452295 |
aatgagaaatgatcacaaacaagctagctaatggaaataaataaatttatctgcacaaacattgtttacatacctctcctacgtaccgttgcatttttgg |
55452196 |
T |
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| Q |
212 |
cacctgaaaatggctgctaccatctagggatggcaaaaacaccc--------------------ataaaatctaacacggttacaggctcataccttgat |
291 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
55452195 |
cacctgaaaatggctgctaccagctagggatggcaaaaacaccctacccggcgggtatccactaataaaatctgacacggttacaggctcataccttgat |
55452096 |
T |
|
| Q |
292 |
aaagtaagggtaaaatgacttaaatatccttaggttaagtataaaagttagcagttccgtcaaaacaccccagatatcaactatttaggttattt |
386 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55452095 |
aaagtaagtgtaaaatgacttaaatatccttaggttaagtataaaatttagcagttccgtcaaaacaccccagatatcaactatttaggttattt |
55452001 |
T |
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