View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10256_6 (Length: 326)

Name: NF10256_6
Description: NF10256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10256_6
NF10256_6
[»] chr5 (17 HSPs)
chr5 (1-312)||(38816628-38816932)
chr5 (136-211)||(19820428-19820503)
chr5 (162-291)||(22423764-22423895)
chr5 (136-203)||(22013364-22013431)
chr5 (136-210)||(42469171-42469245)
chr5 (244-293)||(8420075-8420124)
chr5 (161-210)||(15410483-15410532)
chr5 (158-210)||(6326332-6326384)
chr5 (239-291)||(9929668-9929720)
chr5 (175-259)||(3966492-3966577)
chr5 (151-209)||(15382442-15382500)
chr5 (263-293)||(24906250-24906280)
chr5 (175-208)||(6035472-6035505)
chr5 (175-211)||(17123037-17123073)
chr5 (158-202)||(21522722-21522766)
chr5 (158-202)||(21533288-21533332)
chr5 (175-211)||(27144452-27144488)
[»] chr7 (25 HSPs)
chr7 (136-210)||(27944991-27945065)
chr7 (136-210)||(24105629-24105702)
chr7 (179-261)||(29787354-29787435)
chr7 (158-211)||(11722132-11722185)
chr7 (149-259)||(24339605-24339716)
chr7 (161-242)||(19206025-19206107)
chr7 (175-259)||(32308109-32308194)
chr7 (181-291)||(11700798-11700909)
chr7 (151-211)||(1433419-1433479)
chr7 (131-291)||(7328639-7328805)
chr7 (136-207)||(2034392-2034462)
chr7 (160-211)||(2425767-2425818)
chr7 (136-211)||(43027503-43027578)
chr7 (151-210)||(43249958-43250017)
chr7 (169-211)||(8046061-8046103)
chr7 (175-242)||(22484014-22484082)
chr7 (169-211)||(23191879-23191921)
chr7 (161-211)||(26733279-26733329)
chr7 (180-254)||(30731031-30731104)
chr7 (178-251)||(11072290-11072362)
chr7 (263-292)||(17852091-17852120)
chr7 (175-208)||(25791642-25791675)
chr7 (160-209)||(49107795-49107844)
chr7 (263-291)||(15680900-15680928)
chr7 (175-211)||(20549780-20549816)
[»] chr6 (28 HSPs)
chr6 (158-259)||(10294079-10294181)
chr6 (151-211)||(9027143-9027203)
chr6 (136-211)||(853893-853968)
chr6 (151-259)||(16766662-16766771)
chr6 (151-211)||(5000660-5000720)
chr6 (151-291)||(5732474-5732604)
chr6 (136-204)||(8365560-8365628)
chr6 (138-210)||(12696277-12696348)
chr6 (161-291)||(8805524-8805656)
chr6 (151-259)||(9107355-9107464)
chr6 (160-211)||(9629357-9629408)
chr6 (136-211)||(30866178-30866253)
chr6 (136-210)||(6389693-6389767)
chr6 (161-211)||(9658854-9658904)
chr6 (173-211)||(19040339-19040377)
chr6 (136-204)||(3398569-3398637)
chr6 (151-211)||(7938081-7938141)
chr6 (162-210)||(13851712-13851760)
chr6 (244-291)||(426478-426525)
chr6 (151-210)||(7977865-7977924)
chr6 (168-211)||(20371144-20371187)
chr6 (263-293)||(34073276-34073306)
chr6 (151-254)||(34073337-34073441)
chr6 (158-211)||(426548-426601)
chr6 (250-291)||(2117134-2117175)
chr6 (170-211)||(7265627-7265668)
chr6 (159-211)||(8777007-8777059)
chr6 (151-211)||(34595099-34595159)
[»] chr8 (12 HSPs)
chr8 (158-259)||(22651948-22652050)
chr8 (153-259)||(29510289-29510396)
chr8 (136-204)||(25192388-25192456)
chr8 (145-211)||(926822-926888)
chr8 (158-211)||(27213519-27213572)
chr8 (136-204)||(126390-126457)
chr8 (136-211)||(13436998-13437073)
chr8 (168-211)||(31109552-31109595)
chr8 (149-211)||(24362236-24362298)
chr8 (178-211)||(39954313-39954346)
chr8 (171-211)||(31236611-31236651)
chr8 (168-244)||(37283812-37283887)
[»] chr2 (19 HSPs)
chr2 (136-247)||(21782817-21782927)
chr2 (136-197)||(33519736-33519797)
chr2 (136-211)||(20539708-20539783)
chr2 (151-242)||(4332891-4332981)
chr2 (161-211)||(21616737-21616787)
chr2 (136-209)||(19536434-19536507)
chr2 (135-208)||(23717976-23718048)
chr2 (135-208)||(24105648-24105720)
chr2 (244-291)||(19536361-19536408)
chr2 (244-291)||(19574031-19574078)
chr2 (184-242)||(1327976-1328033)
chr2 (244-290)||(18255945-18255991)
chr2 (244-290)||(34691770-34691816)
chr2 (244-290)||(34714182-34714228)
chr2 (161-259)||(36409614-36409711)
chr2 (151-236)||(18276486-18276570)
chr2 (137-202)||(21624217-21624282)
chr2 (255-291)||(42511322-42511358)
chr2 (186-259)||(44860320-44860394)
[»] scaffold0306 (1 HSPs)
scaffold0306 (135-211)||(13349-13425)
[»] scaffold0223 (1 HSPs)
scaffold0223 (136-291)||(20122-20279)
[»] scaffold0152 (1 HSPs)
scaffold0152 (135-211)||(21902-21978)
[»] chr1 (21 HSPs)
chr1 (159-211)||(6427323-6427375)
chr1 (151-211)||(40917716-40917776)
chr1 (152-211)||(398799-398858)
chr1 (238-291)||(48547938-48547991)
chr1 (159-211)||(2896155-2896207)
chr1 (144-290)||(10572535-10572690)
chr1 (135-210)||(5376535-5376609)
chr1 (167-211)||(12443494-12443538)
chr1 (175-211)||(17831565-17831601)
chr1 (175-211)||(36878450-36878486)
chr1 (158-250)||(1486703-1486796)
chr1 (168-211)||(6415035-6415078)
chr1 (151-251)||(38503285-38503386)
chr1 (149-204)||(48040503-48040558)
chr1 (158-236)||(1262856-1262933)
chr1 (161-211)||(9709795-9709845)
chr1 (161-211)||(34298411-34298461)
chr1 (136-190)||(39130822-39130876)
chr1 (151-211)||(10577769-10577829)
chr1 (175-211)||(19562655-19562691)
chr1 (136-196)||(34315663-34315722)
[»] chr3 (22 HSPs)
chr3 (136-211)||(8383207-8383282)
chr3 (136-259)||(25064859-25064981)
chr3 (149-248)||(5441029-5441128)
chr3 (172-261)||(8039818-8039908)
chr3 (151-210)||(24205076-24205135)
chr3 (136-202)||(8842280-8842346)
chr3 (167-232)||(5407261-5407325)
chr3 (159-211)||(2620087-2620139)
chr3 (151-211)||(28917966-28918026)
chr3 (151-210)||(4991002-4991061)
chr3 (145-204)||(10335327-10335386)
chr3 (136-211)||(55401025-55401100)
chr3 (255-293)||(4466538-4466576)
chr3 (263-293)||(5440965-5440995)
chr3 (137-211)||(8587055-8587129)
chr3 (160-210)||(9800014-9800064)
chr3 (255-293)||(13807237-13807275)
chr3 (137-211)||(32429414-32429488)
chr3 (158-211)||(25093474-25093527)
chr3 (151-211)||(15796328-15796388)
chr3 (159-211)||(26492239-26492291)
chr3 (255-291)||(27505334-27505370)
[»] scaffold0168 (3 HSPs)
scaffold0168 (145-291)||(21002-21149)
scaffold0168 (230-291)||(21217-21278)
scaffold0168 (230-291)||(21346-21407)
[»] scaffold0053 (1 HSPs)
scaffold0053 (151-211)||(8763-8823)
[»] scaffold0007 (1 HSPs)
scaffold0007 (151-210)||(225303-225362)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-259)||(241559-241668)
[»] chr4 (8 HSPs)
chr4 (153-259)||(30982863-30982967)
chr4 (151-211)||(23293020-23293080)
chr4 (175-210)||(35723420-35723455)
chr4 (175-209)||(17345451-17345485)
chr4 (153-210)||(847918-847975)
chr4 (158-211)||(36635296-36635349)
chr4 (247-291)||(18844423-18844467)
chr4 (255-291)||(28470448-28470484)
[»] scaffold0004 (1 HSPs)
scaffold0004 (169-210)||(92790-92831)
[»] scaffold0044 (1 HSPs)
scaffold0044 (176-261)||(53170-53256)
[»] scaffold0018 (2 HSPs)
scaffold0018 (139-211)||(178853-178925)
scaffold0018 (169-210)||(192284-192325)
[»] scaffold0450 (1 HSPs)
scaffold0450 (263-291)||(8564-8592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (245-293)||(46731-46778)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 38816932 - 38816628
Alignment:
Q  1 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  101 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||| ||    
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactcc-------gcacggatactgacacgccgacaccgctaataat 38816740  T
Q  201 ttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcg 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38816739 ttgagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcg 38816640  T
Q  301 tgaatcgtgata 312  Q
    ||||||||||||    
T  38816639 tgaatcgtgata 38816628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||| |||||||||||||| |||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 22423895 - 22423764
Alignment:
Q  162 acacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtc-ggac 258  Q
    ||||| ||||||||||||||| | |||||  ||||| ||||||||||||| | ||| |||| ||||||  ||| ||||||||| ||||||||||| ||||    
T  22423895 acacgacacggatactgacaccctgacactactaataatttgagaaaatcac-ataattcaatataattatatatgtcggtgtcgtgtcggtgtctggac 22423797  T
Q  259 atggctaattcgaggagtgtccgtgcttcatag 291  Q
    | | ||||| |||||||||||||||||||||||    
T  22423796 acgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 22013364 - 22013431
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttg 203  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||||||||| |||||| |||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 42469171 - 42469245
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||||||||| | |||||| ||| ||||| |||||||| |||||||||||||| | |||| ||||||||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaat 42469245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  244 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 293  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 15410532 - 15410483
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||| |||||| ||||||||||||||||||||||| |||| |||||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaat 15410483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 6326384 - 6326332
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    ||||||||| |||||| ||||||||||||||| ||||| | ||||||||||||    
T  6326384 ccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaat 6326332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  239 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 3966492 - 3966577
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 259  Q
    ||||||| ||||||||||||||| ||||||||||||| | | | |||| | ||||  ||||||||||||| ||||| ||||||||||    
T  3966492 actgacatgccgacaccgctaataatttgagaaaatcac-acaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggaca 3966577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 15382442 - 15382500
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaa 209  Q
    |||||| ||||||||| |||||| | |||||||||||||| |||||| |||||| ||||    
T  15382442 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  263 ctaattcgaggagtgtccgtgcttcatagtt 293  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 6035472 - 6035505
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaa 208  Q
    ||||||||||||||||||||||| ||||||||||    
T  6035472 actgacacgccgacaccgctaataatttgagaaa 6035505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 17123037 - 17123073
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  17123037 actgacacgccaacaccgctaataatttgagaaaatc 17123073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 21522722 - 21522766
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgattt 202  Q
    ||||||||| |||||| |||||||||||||||| |||||| ||||    
T  21522722 ccggacacgacacggacactgacacgccgacacagctaataattt 21522766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 21533288 - 21533332
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgattt 202  Q
    ||||||||| |||||| |||||||||||||||| |||||| ||||    
T  21533288 ccggacacgacacggacactgacacgccgacacagctaataattt 21533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 27144452 - 27144488
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  27144452 actgacacgccgacaccgctaataatttgaggaaatc 27144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 24105629 - 24105702
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||||||||| ||||||| | |||||||| |||||| |||||||||||||||| |||||| |||||| |||||    
T  24105629 ctatgaagcacggatacgga-tacggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 24105702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 29787435 - 29787354
Alignment:
Q  179 acacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatg 261  Q
    ||||||||||||||||||| ||||||||||||| | ||| |||| | ||||||||||| |||||  ||||||||| |||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattatgtgttggtgtaatgtcggtgttggacatg 29787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 11722185 - 11722132
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||| |||||| ||||||||||||||||||||||  |||||||||||||    
T  11722185 ccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatc 11722132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 24339605 - 24339716
Alignment:
Q  149 atacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtg 246  Q
    |||||||| ||||||||| || ||| | |||||||||||||| |||||| |||||| |||||| | ||| |||| | |||||  | |||||||||| |||    
T  24339605 atacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtg 24339703  T
Q  247 tcggtgtcggaca 259  Q
    |||||||||||||    
T  24339704 tcggtgtcggaca 24339716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 19206025 - 19206107
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 242  Q
    |||||| |||||| ||  ||||||||||||||||||| ||||||||||||| | ||| |||||||||||  |||||||||||||    
T  19206025 gacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcac-ataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 32308109 - 32308194
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 259  Q
    ||||||||||||||||||||||| ||||||||||||| | ||| |||| | ||||  |||||||| |||| |||||||||| |||||    
T  32308109 actgacacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggaca 32308194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 11700798 - 11700909
Alignment:
Q  181 acgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgt 278  Q
    |||| ||||||| |||| |||||| |||||| | ||| |||| | |||||||||||| |||| || ||||||||||  ||| ||||||| ||||||||||    
T  11700798 acgctgacaccgttaataatttgacaaaatcac-ataattcaatgtaattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgt 11700896  T
Q  279 ccgtgcttcatag 291  Q
    || || |||||||    
T  11700897 ccctgattcatag 11700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 1433419 - 1433479
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||| ||||| |||||| | |||||||||||||||| |||| |||||||||||||    
T  1433419 acggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatc 1433479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 291
Target Start/End: Complemental strand, 7328805 - 7328639
Alignment:
Q  131 atatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat- 229  Q
    ||||||||||||||||| |||||||| ||| ||||| ||| || | | ||||| ||| || |||||| ||||||||||||  | ||| || | | ||||     
T  7328805 atatactatgaagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaataac-ataatttagtgtaatt 7328707  T
Q  230 -tatgtgtcggtgtggtgtc-----ggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
     ||||||||||||| |||||     ||||||||||| | ||||| ||| |||||| ||||||||||||    
T  7328706 atatgtgtcggtgtcgtgtcgtgttggtgtcggacacgcctaatccgatgagtgttcgtgcttcatag 7328639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 2034392 - 2034462
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaa 207  Q
    |||||||||||| ||||||| | | |||||| |||||||||| ||||| ||||||| ||||| |||||||||    
T  2034392 ctatgaagcacggatacgga-tactgacacgacacggatacttacacgtcgacaccactaataatttgagaa 2034462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 2425818 - 2425767
Alignment:
Q  160 ggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||| ||| ||||||||||||||| ||||| |||| |||||||||||||    
T  2425818 ggacacgacacagatactgacacgccggcaccgttaataatttgagaaaatc 2425767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 43027578 - 43027503
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||||| || ||||| | ||||||| |||||| ||||||||| |||| | |||||| |||||| ||||||    
T  43027578 ctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatc 43027503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 43249958 - 43250017
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||| ||||||| | |||||| |||||||||||||||| | |||| ||||||||||||    
T  43249958 acggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaat 43250017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 8046103 - 8046061
Alignment:
Q  169 acggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||    
T  8046103 acggatactgacacgccaacaccactaataatttgagaaaatc 8046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 22484014 - 22484082
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 242  Q
    ||||||||||||||||||||||| |||| ||||||| || ||| |||| ||||||  |||||||||||||    
T  22484014 actgacacgccgacaccgctaataattttagaaaattgc-ataattcagtataattatatgtgtcggtgt 22484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 23191879 - 23191921
Alignment:
Q  169 acggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||    
T  23191879 acggacactgatacgccgacaccgctaataatttgagaaaatc 23191921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 26733279 - 26733329
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| |||||| ||||||||| ||||||||||||| |||||| ||||||    
T  26733279 gacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatc 26733329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 30731031 - 30731104
Alignment:
Q  180 cacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtc 254  Q
    |||||||||||||| ||| ||||||||||||| | ||| |||| | ||||| ||||||||||| |||| ||||||    
T  30731031 cacgccgacaccgcgaataatttgagaaaatcac-ataattcagtgtaattgtgtgtcggtgtcgtgttggtgtc 30731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 11072290 - 11072362
Alignment:
Q  178 gacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt 251  Q
    ||||||||||||||| |||| |||||| ||||    |||| |||| ||||||||||||||||||| ||||||||    
T  11072290 gacacgccgacaccgataataatttgaaaaaaata-tataattcaatataattatgtgtcggtgtcgtgtcggt 11072362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  263 ctaattcgaggagtgtccgtgcttcatagt 292  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 25791642 - 25791675
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaa 208  Q
    ||||||||||||||||||||||| ||||||||||    
T  25791642 actgacacgccgacaccgctaattatttgagaaa 25791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 49107795 - 49107844
Alignment:
Q  160 ggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaa 209  Q
    ||||||| ||||||  ||||||| |||||||||||||| |||||||||||    
T  49107795 ggacacgacacggactctgacacaccgacaccgctaataatttgagaaaa 49107844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  263 ctaattcgaggagtgtccgtgcttcatag 291  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 20549780 - 20549816
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||| |||||||||||||| |||||||||||||    
T  20549780 actgacacaccgacaccgctaataatttgagaaaatc 20549816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 10294079 - 10294181
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcg 255  Q
    ||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||| |||||||| | ||||  ||||||||||||| |||| |||||||    
T  10294079 ccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgc-atatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcg 10294177  T
Q  256 gaca 259  Q
    ||||    
T  10294178 gaca 10294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 9027143 - 9027203
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatc 9027203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 853968 - 853893
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||| |||| |||||||| ||||||||| ||||||| |||||||||||||||  ||||| |||||| ||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatc 853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 16766662 - 16766771
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 248  Q
    |||||| ||||||||| || ||| |||||||||||||||| |||||| |||||| |||||| | ||| |||| | |||||  | |||||||||| |||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtgtc 16766760  T
Q  249 ggtgtcggaca 259  Q
    |||||||||||    
T  16766761 ggtgtcggaca 16766771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||| | |||||||||||||||| ||||||||||||| ||| |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 291
Target Start/End: Complemental strand, 5732604 - 5732474
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcgg 250  Q
    |||||| | ||||||| || ||| |||||||||||||||||| |||| ||||||||||||| | |||||| | | ||||||| |         |||||||    
T  5732604 acggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcac-atattttagtgtaattatat---------gtgtcgg 5732515  T
Q  251 tgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||||||| | ||||| |||||||||||| ||||||||||    
T  5732514 tgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 8365628 - 8365560
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttga 204  Q
    |||||||||||| |||||||| || |||||| |||||| ||||||||||||||||  ||||| ||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttga 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 12696277 - 12696348
Alignment:
Q  138 atgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||||||| |||||||| | ||||||| |||||| |||||||||||||||| |||||| |||||| |||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 12696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 291
Target Start/End: Complemental strand, 8805656 - 8805524
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt---gtcgga 257  Q
    |||||| ||| || || |||||| || ||| |||||| ||||||||||||| | ||| || | | ||||||||||||||||| ||||| |    || |||    
T  8805656 gacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcac-ataatttagtgtaattatgtgtcggtgtagtgtcagacacgtggga 8805558  T
Q  258 catggctaattcgaggagtgtccgtgcttcatag 291  Q
    |||| ||||| |||||||||||||||||||||||    
T  8805557 catgcctaatccgaggagtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 9107464 - 9107355
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 248  Q
    |||||| ||||||||| |||||| ||| |||||||||||| |||||| |||||| |||||| | | | |||| | |||||  | |||||||||| |||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtgtaattacaagtgtcggtgtcgtgtc 9107366  T
Q  249 ggtgtcggaca 259  Q
    |||||||||||    
T  9107365 ggtgtcggaca 9107355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 9629357 - 9629408
Alignment:
Q  160 ggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||| |||||||| ||||||||||||||||| ||| |||||||||||||    
T  9629357 ggacacgacacggatattgacacgccgacaccgccaataatttgagaaaatc 9629408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 30866253 - 30866178
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||| |||||||||||| ||||||| | ||| || || ||||| || ||||||||||| |||||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatc 30866178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 6389693 - 6389767
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||||||||| | || ||| ||||||||| |||||| ||| |||||||||||| | |||| ||||||||||||    
T  6389693 ctatgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaat 6389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 9658854 - 9658904
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| |||||| ||||||||||||||||||||||| |||| ||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatc 9658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 19040339 - 19040377
Alignment:
Q  173 atactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  19040339 atactgacacgccgacaccgctaataatttgagaaaatc 19040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 3398569 - 3398637
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttga 204  Q
    |||||||||| | ||||||||  || ||||| |||||| |||||||||||||||| |||||| ||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttga 3398637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 7938081 - 7938141
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||| || ||| |||||||||||||||| |||||| |||||| ||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 7938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 13851712 - 13851760
Alignment:
Q  162 acacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    ||||| |||||| ||||||||| ||||||||||||| ||||||||||||    
T  13851712 acacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  244 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 7977924 - 7977865
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||| | ||||||| || |||||||||||||||||||| |||||| |||||| |||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaat 7977865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 20371187 - 20371144
Alignment:
Q  168 cacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| | ||||||||||||||||||||| |||||||||||||    
T  20371187 cacggacattgacacgccgacaccgctaataatttgagaaaatc 20371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  263 ctaattcgaggagtgtccgtgcttcatagtt 293  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 34073441 - 34073337
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 248  Q
    |||||| | ||||||| |||||| ||||||| ||| ||| ||||||| ||||||||||||| | ||| |||| | ||||  |||| |||||||| |||||    
T  34073441 acggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctc-ataattcagtgtaattatatgggtcggtgtcgtgtc 34073343  T
Q  249 ggtgtc 254  Q
    ||||||    
T  34073342 ggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 426601 - 426548
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||| |||||| |||||||||||||||| | |||| |||||| ||||||    
T  426601 ccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatc 426548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  250 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 7265668 - 7265627
Alignment:
Q  170 cggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||| ||||||||||| ||||||||||| |||||||||||||    
T  7265668 cggacactgacacgccaacaccgctaataatttgagaaaatc 7265627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 8777059 - 8777007
Alignment:
Q  159 cggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||| |||||| ||||||||||||||||  ||||| |||||| ||||||    
T  8777059 cggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 8777007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 34595099 - 34595159
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||| |||||| | ||||||||||||||  ||||| |||||| ||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatc 34595159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 22651948 - 22652050
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcggtgtcg 255  Q
    ||||||||| |||||| |||||||||||||||| |||||| |||||| |||||| | ||| |||| |||||||  | |||||||||| ||||||||||||    
T  22651948 ccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcaatataattacaagtgtcggtgtcgtgtcggtgtcg 22652046  T
Q  256 gaca 259  Q
    ||||    
T  22652047 gaca 22652050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 29510396 - 29510289
Alignment:
Q  153 ggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcgg 250  Q
    |||| ||||||||| |||||| |||||||||||||||| |||||| |||||| |||||| | | | |||| |||||||  | |||||||||| |||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtataattacaagtgtcggtgtagtgtcgg 29510298  T
Q  251 tgtcggaca 259  Q
    |||||||||    
T  29510297 tgtcggaca 29510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 25192456 - 25192388
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttga 204  Q
    |||||||||||||||||||||  ||||||||  ||||| |||||||||||||||| |||||| ||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttga 25192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 926888 - 926822
Alignment:
Q  145 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||| |||||| ||||||||| |||||| ||||||||||| ||||  ||||| |||||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatc 926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 27213519 - 27213572
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||| ||||||||| ||||||||||||| |||||| |||| ||||||||    
T  27213519 ccggacacgacacggatacagacacgccgacactgctaataatttcagaaaatc 27213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 126457 - 126390
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttga 204  Q
    |||||||||||| ||||| || | |||||||  ||||||||||||||||| ||||||||||| ||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataatttga 126390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 13437073 - 13436998
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||||| | | |||| ||||||| | || ||| |||||||||||||||| |||||| |||||| ||||||    
T  13437073 ctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatc 13436998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 31109595 - 31109552
Alignment:
Q  168 cacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| |||||||||||||||||| |||| |||||||||||||    
T  31109595 cacggacactgacacgccgacaccgttaataatttgagaaaatc 31109552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 24362298 - 24362236
Alignment:
Q  149 atacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||| ||||| ||| ||| || || |||||||||||||||||||| |||||||| ||||    
T  24362298 atacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatc 24362236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 39954346 - 39954313
Alignment:
Q  178 gacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||||||||||||| |||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaaaatc 39954313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 31236651 - 31236611
Alignment:
Q  171 ggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||||||| |||||| |||||||||||||    
T  31236651 ggatacggacacgccgacactgctaataatttgagaaaatc 31236611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 37283887 - 37283812
Alignment:
Q  168 cacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtgg 244  Q
    |||||| ||||||| || | |||||||||| || |||||||||| | ||| |||| | |||||||||||||||||||    
T  37283887 cacggacactgacatgcgggcaccgctaataatctgagaaaatcac-ataattcagtgtaattatgtgtcggtgtgg 37283812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 21782927 - 21782817
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtg 235  Q
    ||||||||||||||||| ||| | ||||||| |||  | |||||||||||||||| |||||| ||||||||||||| | ||| |||| | ||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcac-ataattcagtgtaattatgtg 21782829  T
Q  236 tcggtgtggtgt 247  Q
     |||||| ||||    
T  21782828 ccggtgtcgtgt 21782817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 33519736 - 33519797
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaat 197  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||| ||||||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaat 33519797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 20539783 - 20539708
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||||| |||||||| | ||||||| |||||| ||||||||| |||||| |||||| |||||| ||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatc 20539708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 4332891 - 4332981
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgt 242  Q
    |||||| ||||||||||||| |||||| ||| |||||||| | |||| ||||| ||||||| | ||| |||| | |||||||||||||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttgggaaaatcac-ataattcaatgtaattatgtgtcggtgt 4332981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 21616737 - 21616787
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| |||||| || |||||||||||||||||||| |||||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatc 21616787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 19536507 - 19536434
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaa 209  Q
    |||||||||||  |||||||| ||||||||| |||||| | ||||||||||||||  ||||| |||||| ||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaa 19536434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 23717976 - 23718048
Alignment:
Q  135 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaa 208  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| |||||||||||||| ||||||||||    
T  23717976 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 23718048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 24105648 - 24105720
Alignment:
Q  135 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaa 208  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| |||||||||||||| ||||||||||    
T  24105648 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 24105720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  244 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  244 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 1327976 - 1328033
Alignment:
Q  184 ccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgt 242  Q
    |||||||||||||| |||||||||||||  || | |||| |||||||||||||||||||    
T  1327976 ccgacaccgctaataatttgagaaaatc-ataaaattcagtataattatgtgtcggtgt 1328033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  244 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 290  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  244 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 290  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  244 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 290  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 36409711 - 36409614
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 259  Q
    |||||| |||||||||| ||| |||||||||||| || |||||| |||||| | ||| || | | |||||||||||||||||  ||| |||||| ||||    
T  36409711 gacacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcac-ataatttagtgtaattatgtgtcggtgtcatgttggtgtctgaca 36409614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 18276486 - 18276570
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgt 236  Q
    |||||| |||||||||  || || ||||| | ||||||||||||||| ||||||||||||| || || |||| | |||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcact-taattcagtgtaattatgtgt 18276570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 21624217 - 21624282
Alignment:
Q  137 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgattt 202  Q
    |||||||| || |||||||| ||| ||||| ||| || |||||||||||||||| |||||| ||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattt 21624282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  255 ggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 44860320 - 44860394
Alignment:
Q  186 gacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 259  Q
    |||||||||||| ||||||||||||||| ||| |||| | ||||  ||||||||||||| |||| ||||| |||||    
T  44860320 gacaccgctaataatttgagaaaatcgc-ataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggaca 44860394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  135 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  ||||| |||||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 20122 - 20279
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataatt--atg 233  Q
    |||||||||||  |||||||| ||||||||| |||||| | |||||||||||||| |||||| |||||| |||||| | ||| |||| | |||||  | |    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaag 20220  T
Q  234 tgtcggtgtggtgtcggtgtcggacatggctaattcgaggagt---gtccgtgcttcatag 291  Q
    |||| |||| |||||||||  ||||| | ||||| ||||||||   |||||||||||||||    
T  20221 tgtcagtgtcgtgtcggtg--ggacacgcctaatccgaggagtacagtccgtgcttcatag 20279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  135 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  ||||| |||||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  159 cggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 40917716 - 40917776
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatc 40917776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 398858 - 398799
Alignment:
Q  152 cggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatc 398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  238 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 2896207 - 2896155
Alignment:
Q  159 cggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||  |||||| ||||||||||||||||||||||| |||||||||||||    
T  2896207 cggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatc 2896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 290
Target Start/End: Complemental strand, 10572690 - 10572535
Alignment:
Q  144 cacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataatt--atgtgtcggtg 241  Q
    |||| |||||||| ||||||||| || | | ||||||||||||||||| ||||| ||||||||||||| | ||| |||  | |||||  |||||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcac-ataattcggtgtaattaaatgtgtcggtg 10572592  T
Q  242 tggtgtcggtgtc--------ggacatggctaattcgaggagtgtccgtgcttcata 290  Q
    | |||| ||||||        ||||| | ||||||| ||||||||||||||||||||    
T  10572591 ttgtgttggtgtcaggcacgtggacacgcctaattcaaggagtgtccgtgcttcata 10572535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 5376609 - 5376535
Alignment:
Q  135 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    ||||||| ||||| |||| || |||||||||| |||||| ||| ||||||||||||||||||| |||| |||||||    
T  5376609 actatgaggcacgtatacaga-tccggacacgacacggacactaacacgccgacaccgctaataatttaagaaaat 5376535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 12443538 - 12443494
Alignment:
Q  167 gcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||| ||||||||||||| |||||| |||||||||||||    
T  12443538 gcacggatacggacacgccgacacagctaataatttgagaaaatc 12443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 17831601 - 17831565
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||||||||||||||| |||||||||||||    
T  17831601 actgacacgccgacaccgctaataatttgagaaaatc 17831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 36878450 - 36878486
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||||||||||||||| |||||||||||||    
T  36878450 actgacacgccgacaccgctaataatttgagaaaatc 36878486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 1486796 - 1486703
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcgg 250  Q
    ||||| ||| ||||||||||||||||| ||||| |||||| |||||| |||||| | ||| |||| | |||||||  |||||||||| |||||||    
T  1486796 ccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcac-ataattcagtgtaattataagtgtcggtgtcgtgtcgg 1486703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 6415078 - 6415035
Alignment:
Q  168 cacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  6415078 cacggacactgacacgccgacatcgctaattatttgagaaaatc 6415035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 38503285 - 38503386
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 248  Q
    |||||| | ||||| | |||||| ||| |||| |||||||||||||| |||||||||||||  ||||||||| | ||||  |||||||||||||  ||||    
T  38503285 acggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatc-atatatttcagtgtaattatatgtgtcggtgtcctgtc 38503383  T
Q  249 ggt 251  Q
    |||    
T  38503384 ggt 38503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 48040558 - 48040503
Alignment:
Q  149 atacggactccggacacggcacggatactgacacgccgacaccgctaatgatttga 204  Q
    |||||||| ||||||||| |||||| |||||||||||||||| | |||| ||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgacacagataataatttga 48040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 1262856 - 1262933
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgt 236  Q
    ||||||||| |||| | || ||||||||||||| |||||| ||||||||||||| | ||| |||| |||||||| ||||    
T  1262856 ccggacacgacacgaacacggacacgccgacacagctaataatttgagaaaatcac-ataattcaatataattaagtgt 1262933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 9709795 - 9709845
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| |||||| ||||||| ||| ||||||||||| |||||||||||||    
T  9709795 gacacgacacggacactgacatgcctacaccgctaataatttgagaaaatc 9709845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 34298411 - 34298461
Alignment:
Q  161 gacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| |||||| |||||||| |||||||| ||||| |||||||||||||    
T  34298411 gacacgacacggaaactgacacaccgacaccactaataatttgagaaaatc 34298461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 39130876 - 39130822
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacac 190  Q
    |||||||||||| |||||||| ||||||||| || ||||| |||||||| |||||    
T  39130876 ctatgaagcacggatacggacaccggacacgacatggatattgacacgctgacac 39130822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 10577829 - 10577769
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||| |||||| || ||||||||||||| ||||||  ||| ||||||||    
T  10577829 acggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatc 10577769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 19562691 - 19562655
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||||||||| |||||| |||||||||||||    
T  19562691 actgacacgccgacactgctaataatttgagaaaatc 19562655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 34315663 - 34315722
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaa 196  Q
    |||||||||||| ||||||| |  ||||||| |||||||||||||| |||||||| |||||    
T  34315663 ctatgaagcacggatacgga-tatggacacgacacggatactgacatgccgacacagctaa 34315722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 8383207 - 8383282
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||| |||||| | |||||| | ||||||| |||||| | ||||||||||||||||||||| |||||||||||||    
T  8383207 ctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatc 8383282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 25064859 - 25064981
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtg 235  Q
    ||||||| ||||  ||| ||| ||||||||| ||| || | |||||||||||||||||||||||||||| |||||| | ||| || | | ||||||||||    
T  25064859 ctatgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcac-ataatttagtgtaattatgtg 25064957  T
Q  236 tcggtgtggtgtcggtgtcggaca 259  Q
    | ||| | |||| |||||||||||    
T  25064958 ttggtatcgtgttggtgtcggaca 25064981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 5441128 - 5441029
Alignment:
Q  149 atacggac-tccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgt 247  Q
    |||||||| |||||||||| ||| || |||||||||||| |||||||||  ||||||||||||| | ||| |||| |  |||||||||||||||| ||||    
T  5441128 atacggacatccggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcac-ataattcaatggaattatgtgtcggtgttgtgt 5441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 8039908 - 8039818
Alignment:
Q  172 gatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggacatg 261  Q
    |||| ||||||||| ||||||||||| ||||||||||||   |||| |||| | ||||  ||||||||||||| ||||||||||||||||||    
T  8039908 gatattgacacgccaacaccgctaataatttgagaaaat-tatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatg 8039818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 24205135 - 24205076
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||| ||||||||| |||||| |||||||||||||||| | |||| ||||||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaat 24205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 8842280 - 8842346
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgattt 202  Q
    |||||||||||| |||||||| ||||| ||| |||||| | ||||| ||||||||||||||| ||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataattt 8842346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 5407325 - 5407261
Alignment:
Q  167 gcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattat 232  Q
    |||||||||| |||||||||||||||||||  ||||||||||||| | ||| |||||| |||||||    
T  5407325 gcacggataccgacacgccgacaccgctaaaaatttgagaaaatcac-ataattcattgtaattat 5407261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 2620139 - 2620087
Alignment:
Q  159 cggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||| | |||| ||||||||||||||||| ||||| |||||||||||||    
T  2620139 cggacacgactcggacactgacacgccgacaccactaatcatttgagaaaatc 2620087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 28917966 - 28918026
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||| |||||| |||||||||||||||  |||||| |||||| ||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatc 28918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 4991061 - 4991002
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||| ||| ||||| |||||| |||||||| ||||||||||||||  |||||||||||    
T  4991061 acggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaat 4991002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 10335386 - 10335327
Alignment:
Q  145 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttga 204  Q
    ||||| |||||| ||||||||| |||||| ||||||||||||||||  ||||| ||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttga 10335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 55401025 - 55401100
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||||||  |||||||| ||||| ||| |||||| ||||| ||||||||||  ||||| |||||| ||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatc 55401100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  255 ggacatggctaattcgaggagtgtccgtgcttcatagtt 293  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  263 ctaattcgaggagtgtccgtgcttcatagtt 293  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 8587129 - 8587055
Alignment:
Q  137 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||  |||||||| ||||||| | |||||| ||||||||||||||||  ||| | |||||| ||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatc 8587055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 9800014 - 9800064
Alignment:
Q  160 ggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    ||||||| |||| | ||||||||||||||||| ||||| ||||||||||||    
T  9800014 ggacacgacacgtacactgacacgccgacacctctaataatttgagaaaat 9800064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  255 ggacatggctaattcgaggagtgtccgtgcttcatagtt 293  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 32429488 - 32429414
Alignment:
Q  137 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||||| |||||||| ||||||||  |||| | | |||||| |||||| ||||||| |||| ||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatc 32429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 25093474 - 25093527
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||| ||| || ||| |||||||||||| | ||||||||||||||||||    
T  25093474 ccggacacgacactgacactaacacgccgacactgttaatgatttgagaaaatc 25093527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 15796388 - 15796328
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||| |||||| | |||||||||||||| | |||| |||||| ||||||    
T  15796388 acggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatc 15796328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 26492291 - 26492239
Alignment:
Q  159 cggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||||| |||||| |||||||||||||||  |||||| |||||| ||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaataatttgaaaaaatc 26492239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  255 ggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 21002 - 21149
Alignment:
Q  145 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattat--gtgtcggtgt 242  Q
    ||||| |||||| || |||||| |||||| ||||||| || ||||| | |||| ||||||||||||| | |||  ||  |||||||||  |||||||| |    
T  21002 acgaacacggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatcac-ataagtcggtataattatatgtgtcggtat 21100  T
Q  243 ggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
     ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21101 cgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  230 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  230 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 8763 - 8823
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||||| |||||| ||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 8823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 225362 - 225303
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||||| ||||||||| |||||| |||||||||||||||| | |||| ||||||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaat 225303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 241559 - 241668
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtc 248  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||||| |||||  |||||| | ||| || | | |||||||  |||||||||| ||||     
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcac-ataatttagtgtaattatgagtgtcggtgtcgtgtt 241657  T
Q  249 ggtgtcggaca 259  Q
    |||||||||||    
T  241658 ggtgtcggaca 241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 30982967 - 30982863
Alignment:
Q  153 ggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcgg 250  Q
    |||| ||||| ||| |||||| || ||||||||   ||||||||||||||||||||||| | |||||||| | |||||||  |||||||||| |||||||    
T  30982967 ggacaccggatacgacacggacacagacacgcc---accgctaatgatttgagaaaatcac-atatttcagtgtaattataagtgtcggtgtcgtgtcgg 30982872  T
Q  251 tgtcggaca 259  Q
    |||| ||||    
T  30982871 tgtcagaca 30982863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 23293080 - 23293020
Alignment:
Q  151 acggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    |||||| ||||||||| |||||| | |||||||||||||| |||||| |||||| ||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 23293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 35723455 - 35723420
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaat 210  Q
    ||||||||||||||||||||||| ||||||||||||    
T  35723455 actgacacgccgacaccgctaataatttgagaaaat 35723420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 17345485 - 17345451
Alignment:
Q  175 actgacacgccgacaccgctaatgatttgagaaaa 209  Q
    ||||||||||||||||||||||| |||||||||||    
T  17345485 actgacacgccgacaccgctaataatttgagaaaa 17345451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 847918 - 847975
Alignment:
Q  153 ggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    |||| ||||||||| ||| || |||||||||||||  |||||||| ||||||||||||    
T  847918 ggaccccggacacgacacagacactgacacgccgatgccgctaataatttgagaaaat 847975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 36635296 - 36635349
Alignment:
Q  158 ccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||| | |||| ||||||||||| ||||| ||||| |||||||||||||    
T  36635296 ccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatc 36635349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  247 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  255 ggacatggctaattcgaggagtgtccgtgcttcatag 291  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 92790 - 92831
Alignment:
Q  169 acggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  92790 acggacactgacacgccgacaccgctaataatttgagaaaat 92831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 53170 - 53256
Alignment:
Q  176 ctgacacgccgacaccgctaatgatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg 261  Q
    |||||||||||| ||||| ||| ||||||||||||| | ||| |||| | |||||||  |||||||||  ||||||||||||||||||    
T  53170 ctgacacgccgataccgccaataatttgagaaaatcac-ataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatg 53256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 178925 - 178853
Alignment:
Q  139 tgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaatgatttgagaaaatc 211  Q
    ||||||||| |||  ||| ||||||||| |||||| ||||||||||||||||  ||||| |||||| ||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 178853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 192325 - 192284
Alignment:
Q  169 acggatactgacacgccgacaccgctaatgatttgagaaaat 210  Q
    ||||| |||||||||||||||||| |||| ||||||||||||    
T  192325 acggacactgacacgccgacaccgttaataatttgagaaaat 192284  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  263 ctaattcgaggagtgtccgtgcttcatag 291  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  245 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 293  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

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