View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10256_low_1 (Length: 779)

Name: NF10256_low_1
Description: NF10256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10256_low_1
NF10256_low_1
[»] chr3 (1 HSPs)
chr3 (4-764)||(49698470-49699229)


Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 4 - 764
Target Start/End: Complemental strand, 49699229 - 49698470
Alignment:
Q  4 agtggaaacgagataaaatagaaaccatgttcttagatatctcctcgcaataggcccatggctatccacaagcaaatacgtagttttgtcataataagca 103  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49699229 agtggaaacgagatcaaatagaaaccatgttcttagatatctcctcgcaataggcccatggctatccacaagcaaatacgtagttttgtcatagtaagca 49699130  T
Q  104 acagagaaagttaaccaaatatcaaagaaaaatattataatcacaacattatcagtaattgaaagaggtctcaaaggttcattcaagaacccgaattcaa 203  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49699129 acaaagaaagttaaccaaatatcaaagaaaaatattatattcacaacattatcagtaatcgaaagaggtctcaaaggttcattcaagaacccgaattcaa 49699030  T
Q  204 atggtgacacccatgcagtgtagaacactaacaccaccaaaaacatctgccaccatctgcatgccnnnnnnnnncaagaaattaacttactaattaagaa 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  49699029 atggtgacacccatgcagtgtagaacactaacaccaccaaaaacatctgccaccatctgcatgccaaaaaaa--caagaaattaacttactaattaagaa 49698932  T
Q  304 caaaatgattagtttatacggtttcacgcagatataagaattatataacaaaaattaataac-aagcatacctgtagcgacggtcattgggggagatggt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49698931 caaaatgattagtttatacggtttcacgcagatataagaattatataacaaaaattaataacgaagcatacctgtagcgacggtcattgggggagatggt 49698832  T
Q  403 tcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccggtgaggctgtacatgctgccatcatcgtgttccggg 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49698831 tcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccagtgaggctgtacatgctgccatcatcgtgttccggg 49698732  T
Q  503 agaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacacc 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49698731 agaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacacc 49698632  T
Q  603 gtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatga 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49698631 gtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatga 49698532  T
Q  703 ttaatcaccatgcaacactagcttctttattaattctctggagatggaatttgtgtggtatt 764  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49698531 ttaatcaccatgcaacaccagcttctttattaattctctggagatggaatttgtgtggtatt 49698470  T

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