View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10257_11 (Length: 309)
Name: NF10257_11
Description: NF10257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10257_11 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 28 - 290
Target Start/End: Original strand, 42123759 - 42124021
Alignment:
| Q |
28 |
tttactccatattggtattgtttcaccaagtttcctttttcctacaagtacccttttggctataacacatgataatgcagctataaaacctgagagaatc |
127 |
Q |
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| T |
42123759 |
tttactccatattggtattgtttcaccaagtttcctttttcctacaagtacccttttggctataacacatgataatgcagctataaaacctgagagaatc |
42123858 |
T |
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| Q |
128 |
caaaagaatggaagtaaccaatggagtggaagttttttgacatccttaaaataaacaaccatgtttagaggaacaaaagcagctaaaccaattaccatgt |
227 |
Q |
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| T |
42123859 |
caaaagaatggaagtaaccaatggagtggaagttttttgacatccttaaaataaacaaccatgtttagaggaacaaaagcagctaaaccaattaccatgt |
42123958 |
T |
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| Q |
228 |
gaggtaaaatagtttgtagtaatggctgaatgaagagtgctgagaatgtttgataccatgttc |
290 |
Q |
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| T |
42123959 |
gaggtaaaatagtttgtagtaatggctgaatgaagagtgctgagaatgtttgataccatgttc |
42124021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 24928247 - 24928310
Alignment:
| Q |
77 |
acccttttggctataacacatgataatgcagctataaaacctgagagaatccaaaagaatggaa |
140 |
Q |
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| T |
24928247 |
acccatttggctataacacataacaatgcagctaaaacacctgagagaatccaaaacaatggaa |
24928310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 24928409 - 24928456
Alignment:
| Q |
239 |
gtttgtagtaatggctgaatgaagagtgctgagaatgtttgataccat |
286 |
Q |
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| T |
24928409 |
gtttgtagaaatggctgaatgaagagtgatgagaaggtttgataccat |
24928456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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