View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10257_12 (Length: 306)

Name: NF10257_12
Description: NF10257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10257_12
NF10257_12
[»] chr1 (10 HSPs)
chr1 (67-293)||(25483195-25483421)
chr1 (67-293)||(25860614-25860840)
chr1 (1-179)||(25886331-25886509)
chr1 (1-104)||(25604234-25604337)
chr1 (67-170)||(25603623-25603726)
chr1 (67-179)||(25884455-25884567)
chr1 (263-293)||(25603804-25603834)
chr1 (264-293)||(25885880-25885909)
chr1 (3-39)||(25483726-25483762)
chr1 (3-39)||(25884234-25884270)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 67 - 293
Target Start/End: Complemental strand, 25483421 - 25483195
Alignment:
Q  67 aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25483421 aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttatc 25483322  T
Q  167 tgaaattcttcgtcctcctgctgtgaagaccaccattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaaccatttcccaaccca 266  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483321 tgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaaccatttcccaaccca 25483222  T
Q  267 aatgaaggtaagtttgtgccctgtctc 293  Q
    |||||||||||||||||| ||||||||    
T  25483221 aatgaaggtaagtttgtgtcctgtctc 25483195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 67 - 293
Target Start/End: Original strand, 25860614 - 25860840
Alignment:
Q  67 aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25860614 aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttatc 25860713  T
Q  167 tgaaattcttcgtcctcctgctgtgaagaccaccattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaaccatttcccaaccca 266  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25860714 tgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaaccatttcccaaccca 25860813  T
Q  267 aatgaaggtaagtttgtgccctgtctc 293  Q
    |||||||||||||||||| ||||||||    
T  25860814 aatgaaggtaagtttgtgtcctgtctc 25860840  T

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Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 25886331 - 25886509
Alignment:
Q  1 cacccttcatcaatatgttatgtgaatccgtggttattatcttgccttatgaataaacagaagttgaagttgctaagatggaatataccaactggtctcc 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25886331 cacccttcatcaatatgttatgtgaatccgtgcttattatcttgccttatgaataaacagaagttgaagttgctaagatggaatataccgactggtctcc 25886430  T
Q  101 atttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttctgaaattcttcgt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  25886431 atttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggaccgtaagtatttttctgaatttcttcgt 25886509  T

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Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 25604234 - 25604337
Alignment:
Q  1 cacccttcatcaatatgttatgtgaatccgtggttattatcttgccttatgaataaacagaagttgaagttgctaagatggaatataccaactggtctcc 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25604234 cacccttcatcaatatgttatgtgaatccgtgcttattatcttgccttatgaataaacagaagttgaagttgctaagatggaatataccgactggtctcc 25604333  T
Q  101 attt 104  Q
    ||||    
T  25604334 attt 25604337  T

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Target: chr1; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 25603623 - 25603726
Alignment:
Q  67 aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttc 166  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  25603623 aagttgctaagatggaatataccgactggtctccattgctgaaggaacactgcgaacggtatcttgctaagaagaaagaagaggaccgtaagtatttttc 25603722  T
Q  167 tgaa 170  Q
    ||||    
T  25603723 tgaa 25603726  T

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Target: chr1; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 25884455 - 25884567
Alignment:
Q  67 aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttc 166  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||| |||||||||||||| | |||||||||||    
T  25884455 aagttgctaagatggaatataccgactggtctccattgctgaaggaaaactgcgaaaagtatcttgctaagcagaaagaagaggaccgtaagtatttttc 25884554  T
Q  167 tgaaattcttcgt 179  Q
    |||| ||||||||    
T  25884555 tgaatttcttcgt 25884567  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 25603804 - 25603834
Alignment:
Q  263 cccaaatgaaggtaagtttgtgccctgtctc 293  Q
    |||||||||||||||||||||||||||||||    
T  25603804 cccaaatgaaggtaagtttgtgccctgtctc 25603834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 25885880 - 25885909
Alignment:
Q  264 ccaaatgaaggtaagtttgtgccctgtctc 293  Q
    ||||||||||||||||||||||||||||||    
T  25885880 ccaaatgaaggtaagtttgtgccctgtctc 25885909  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 25483762 - 25483726
Alignment:
Q  3 cccttcatcaatatgttatgtgaatccgtggttatta 39  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  25483762 cccttgatcaatatgttatgtgaatccgtgcttatta 25483726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 25884234 - 25884270
Alignment:
Q  3 cccttcatcaatatgttatgtgaatccgtggttatta 39  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  25884234 cccttgatcaatatgttatgtgaatccgtgcttatta 25884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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