View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10257_4 (Length: 384)
Name: NF10257_4
Description: NF10257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10257_4 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 158 - 358
Target Start/End: Complemental strand, 26902248 - 26902048
Alignment:
| Q |
158 |
cattcggattcgggtcggatcctacatttctcgaaccgtcaccggaatcctccacaaccgagagaaatgacaggatcactcctcgcaagattcctcctcc |
257 |
Q |
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| T |
26902248 |
cattcggattcgggtcggatcctacatttcttgaaccatcaccggaatcctccaccaccgagagaaatgacaggatcactcctcgcaagattcctcctcc |
26902149 |
T |
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| Q |
258 |
gccgatcaccaccgccgcagagccaattcatctttcaacgtggcatttctcagtccgcagcagaaagaaccaaagacatcgtcgccgccgaaccaccggt |
357 |
Q |
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| T |
26902148 |
gtcgatcaccaccgccgcagagccaattcatctttcaacgtggcatttctcagtccgcagcagaaagaaccaaagacaacgtcgccgccgaaccaccggt |
26902049 |
T |
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| Q |
358 |
g |
358 |
Q |
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| T |
26902048 |
g |
26902048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 26902384 - 26902310
Alignment:
| Q |
22 |
acatcatcactcccacacccattccctatataaactcccccattcttctctcatccctccaattccaaatcctga |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26902384 |
acatcatcactcccacacccattccctatataaactcccccattcttctctcatccctccaattccaaatcctga |
26902310 |
T |
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