View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10257_7 (Length: 352)
Name: NF10257_7
Description: NF10257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10257_7 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 4296147 - 4296504
Alignment:
| Q |
1 |
attgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaatcaccac |
100 |
Q |
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| T |
4296147 |
attgctgctagggcaccatatcaaacaagtaaccaaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaatcaccac |
4296246 |
T |
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| Q |
101 |
aagaccacagatcagaatgtagctccagctctgtgtttctttaact---------------ctatatatctatgaactaaatgtttgtgtatgttgtggc |
185 |
Q |
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| T |
4296247 |
aagaccacagatcagaatgtagctccagctctgtgtttctttaacttttctttgtttaactctatatatctatgaactaaatgtttgtgtatgttgtggc |
4296346 |
T |
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| Q |
186 |
tcatgcttattagtacccataattaattaag-----tgtagttctgattgacccaaaagaagtgtaattctggaaacctctacattcactgtatatgcat |
280 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4296347 |
tcatgcttattagtacccataattaattaagaagagtgtagttctgattgacccaaaagaagtctaattctggaaacctctacattcactgtatatgcat |
4296446 |
T |
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| Q |
281 |
ctatttagcagtgttgttatagaaaatgtcctcaataatcagtatgatcattcttctc |
338 |
Q |
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| T |
4296447 |
ctatttagcagtgttgttatagaaaatgtcctcaataatcaatatgatcattcttctc |
4296504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4301635 - 4301727
Alignment:
| Q |
1 |
attgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
93 |
Q |
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| T |
4301635 |
attgctgcaaaggcaccatatcaaacaagtaacccaacaaaccttaataagccaattaacgaattcatgtcatggctctccttggcaccacaa |
4301727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 4307371 - 4307472
Alignment:
| Q |
1 |
attgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaatcaccac |
100 |
Q |
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|||||||| | |||||||||||||||||| || |||| || | |||||| |||||| |||||| ||| |||||||||| ||||||||||||||||||| |
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| T |
4307371 |
attgctgccaaggcaccatatcaaacaagcaatccaacaaccattaataaaccaattgatgaatctatgacatggctctctttggcaccacaatcaccac |
4307470 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
4307471 |
aa |
4307472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 4311974 - 4312024
Alignment:
| Q |
45 |
taataagccaattaatgaattcatgtcatggctctccttggcaccacaatc |
95 |
Q |
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| T |
4311974 |
taataagccaattgatgaatccatgtcatggctatccttggcaccacaatc |
4312024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 4301865 - 4301904
Alignment:
| Q |
162 |
ctaaatgtttgtgtatgttgtggctcatgcttattagtac |
201 |
Q |
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| T |
4301865 |
ctaaatatttgtgaatgttgtggctcatgcttattagtac |
4301904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 4303040 - 4303130
Alignment:
| Q |
193 |
tattagtacccataattaattaagtgtagttctgattgacc-caaaagaagtgtaattctggaaacctctacattcactgtatatgcatctattt |
286 |
Q |
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| T |
4303040 |
tattagtacccataattaa--gagtgtagttctgatttacctcaaaagaattgtaattttggttac--ttacattcactatatatgcgtctattt |
4303130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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