View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10257_8 (Length: 339)

Name: NF10257_8
Description: NF10257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10257_8
NF10257_8
[»] chr8 (5 HSPs)
chr8 (57-339)||(38341652-38341934)
chr8 (213-296)||(38333942-38334025)
chr8 (2-31)||(16515088-16515117)
chr8 (1-41)||(38341932-38341971)
chr8 (58-126)||(45000131-45000198)
[»] chr3 (3 HSPs)
chr3 (58-161)||(37549926-37550029)
chr3 (92-135)||(20642070-20642114)
chr3 (58-102)||(48507450-48507494)
[»] chr2 (5 HSPs)
chr2 (58-161)||(37422857-37422960)
chr2 (1-65)||(21449705-21449764)
chr2 (67-115)||(13728636-13728685)
chr2 (64-160)||(41873557-41873654)
chr2 (58-132)||(34957894-34957970)
[»] chr4 (7 HSPs)
chr4 (58-162)||(16502583-16502688)
chr4 (58-161)||(53504679-53504782)
chr4 (68-115)||(38870592-38870639)
chr4 (58-132)||(40020673-40020752)
chr4 (58-154)||(3479153-3479248)
chr4 (1-31)||(38870697-38870727)
chr4 (1-29)||(49445045-49445073)
[»] chr1 (3 HSPs)
chr1 (59-154)||(19607208-19607304)
chr1 (53-129)||(11046900-11046978)
chr1 (60-162)||(13818793-13818895)
[»] scaffold0493 (1 HSPs)
scaffold0493 (48-115)||(4167-4234)
[»] chr7 (2 HSPs)
chr7 (58-104)||(45249228-45249274)
chr7 (58-145)||(44208508-44208595)
[»] chr5 (6 HSPs)
chr5 (58-160)||(29465695-29465797)
chr5 (65-161)||(15047156-15047253)
chr5 (57-102)||(29075674-29075719)
chr5 (58-128)||(31673991-31674063)
chr5 (92-135)||(21524218-21524262)
chr5 (92-135)||(21534778-21534822)
[»] chr6 (1 HSPs)
chr6 (58-126)||(10525257-10525324)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 57 - 339
Target Start/End: Complemental strand, 38341934 - 38341652
Alignment:
57 atattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38341934 atattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 38341835  T
157 aacaatacatcattttatttgcaatctttctcagaatgctgacgggagnnnnnnncctctaaagaagcataaaagatctcctattgttggtgtggaggat 256  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||    
38341834 aacaatacatcattttatttgcaatctttctcagaatgctaacgggagaaaaaaacctctaaagaagcataaaagatctcctattgttggtgtggaggat 38341735  T
257 aaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggt 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38341734 aaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggt 38341652  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 38334025 - 38333942
Alignment:
213 ctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcag 296  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| |||||||| | || |||||||||||||    
38334025 ctctaaagaagcataaaatatcttctattgctggtgtggaggataaaggtggtaaatcctcaaggaaaccaagaaaacaagcag 38333942  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
2 agagtatgtgtataaataagagaacacaaa 31  Q
    ||||||||||||||||||||||||||||||    
16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38341971 - 38341932
Alignment:
1 gagagtatgtgtataaataagagaacacaaaaggttagata 41  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
38341971 gagagtatgtgtataaataggagaacac-aaaggttagata 38341932  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 45000198 - 45000131
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 126  Q
    |||||| ||||||||||||||| |||||| ||| |||||  |||| |||||||||||| ||||| ||||    
45000198 tattgtgaaggggaaacccttg-aggagatattctctcctgttctatcctatttcttaataaaattgtt 45000131  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 37549926 - 37550029
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 157  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||   ||||||||||||||||||||||| ||| |||||||| ||    
37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
158 acaa 161  Q
    ||||    
37550026 acaa 37550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 20642114 - 20642070
Alignment:
92 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 135  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
20642114 tctcccattctttcctattttcttaataaaagttttctttctatt 20642070  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 48507450 - 48507494
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattct 102  Q
    |||||| || ||||||||||||||||||||||| ||||| |||||    
48507450 tattgtgaaagggaaacccttggaggagagattctctcctattct 48507494  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 37422960 - 37422857
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 157  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| |   |||||||| |||||||| ||    
37422960 tattgtgaaggtgaaacccttggaggagagattctctcctattctatcctatttcttcataaaagtgttctttctttggaattcaatttttgggttccta 37422861  T
158 acaa 161  Q
    ||||    
37422860 acaa 37422857  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21449764 - 21449705
Alignment:
1 gagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 65  Q
    ||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
21449764 gagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 13728636 - 13728685
Alignment:
67 ggggaaacccttggaggagaga-ttatctcccattctttcctatttctta 115  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
13728636 ggggaaacccttggaggagatatttctctcctattctttcctatttctta 13728685  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 41873654 - 41873557
Alignment:
64 aaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttcttaaca 160  Q
    ||||||||||| |||||||||||||||||||||   |||||| || ||||||| |  |   |||||||||||||||||||  | |||||||| |||||    
41873654 aaaggggaaactcttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 34957970 - 34957894
Alignment:
58 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttc-ttagtaaaagtgttctttct 132  Q
    |||||| |||| | ||||||||||||||||| || ||||| ||| ||||||||||| ||| ||||||||||| ||||    
34957970 tattgtgaaggtgtaacccttggaggagagatttctctcctattatttcctatttctttattaaaagtgttcgttct 34957894  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 16502583 - 16502688
Alignment:
58 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 156  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| || ||||||||| || ||||||||||||||    || ||||| |||||||| |    
16502583 tattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttctaaagaatccaattcttgggttcct 16502682  T
157 aacaat 162  Q
    ||||||    
16502683 aacaat 16502688  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 53504679 - 53504782
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 157  Q
    |||||| ||||||||||||||||||||| |||| || ||  |||| || |||||||||    ||||||| |||||||||||||||||| || ||||| ||    
53504679 tattgtgaaggggaaacccttggaggagtgattctcccctgttctatcatatttcttaaattaagtgttttttctattccattcaattatttggttccta 53504778  T
158 acaa 161  Q
    ||||    
53504779 acaa 53504782  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 38870639 - 38870592
Alignment:
68 gggaaacccttggaggagagattatctcccattctttcctatttctta 115  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||    
38870639 gggaaacccttgcaggagagattatctcccactctatcctatttctta 38870592  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 40020752 - 40020673
Alignment:
58 tattgtaaaggggaaacccttggaggagagatt-atctccc-attctttcctattt---cttagtaaaagtgttctttct 132  Q
    |||||| |||||||| |||||| |||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
40020752 tattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttct 40020673  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 3479248 - 3479153
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttc 154  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||  || |||||||||   |||||||||||||| ||  |||||||| ||||||||    
3479248 tattgtcaaggggaaacccttg-aggagagattctctcttattccatcatatttcttaaataaagtgttctttcttttgaattcaattcttgggttc 3479153  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 38870727 - 38870697
Alignment:
1 gagagtatgtgtataaataagagaacacaaa 31  Q
    |||||||||||||||||||||||||||||||    
38870727 gagagtatgtgtataaataagagaacacaaa 38870697  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 49445073 - 49445045
Alignment:
1 gagagtatgtgtataaataagagaacaca 29  Q
    |||||||||||||||||||||||||||||    
49445073 gagagtatgtgtataaataagagaacaca 49445045  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 19607304 - 19607208
Alignment:
59 attgtaaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttc 154  Q
    ||||| |||||||||||||||||||||||||| ||||| | |||||| || ||||||| | ||| |||||||| |||||||| |||||  |||||||    
19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttc 19607208  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 11046900 - 11046978
Alignment:
53 ttgaatattgtaaaggggaaacccttggaggagaga-ttatctcccattctttccta-tttcttagtaaaagtgttctt 129  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||    
11046900 ttgaacattgtgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttctt 11046978  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 13818895 - 13818793
Alignment:
60 ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaac 159  Q
    |||| ||||||||||||||| |||||||||| ||||||||| | || ||||||||  | ||||| |||||||| |   |||||||| ||||| || ||||    
13818895 ttgtgaaggggaaacccttgaaggagagattctctcccattttatcatatttcttcatgaaagttttctttctttcgaattcaattcttgggctcctaac 13818796  T
160 aat 162  Q
    |||    
13818795 aat 13818793  T

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Target: scaffold0493 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 4234 - 4167
Alignment:
48 atcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttctta 115  Q
    |||||||||||||||| || |||||||||||| |||||||||| || || ||||| || |||||||||    
4234 atcttttgaatattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttctta 4167  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 45249274 - 45249228
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattcttt 104  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||    
45249274 tattgtgaaggggaaacccttggaggatagattttctcccattcttt 45249228  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 44208595 - 44208508
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaatt 145  Q
    |||||| |||||||||| ||||||||| ||||| ||||  ||||| || | |||||||   ||||| ||||||||||| |||||||||    
44208595 tattgtgaaggggaaactcttggaggaaagattctctcttattctatcgtgtttcttaaataaagtattctttctatttcattcaatt 44208508  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 29465695 - 29465797
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 157  Q
    |||||| ||||||||||  |||||||||||||| |||     ||| || |||||||||   ||||||||||||||||||||||||||| |||| ||| ||    
29465695 tattgtgaaggggaaacggttggaggagagattctcttttcgtctatcatatttcttaaataaagtgttctttctattccattcaattcttggattccta 29465794  T
158 aca 160  Q
    |||    
29465795 aca 29465797  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 15047156 - 15047253
Alignment:
65 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaa 161  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||| || | | |||||||||||||||| |   || ||||| |||||||| ||||||    
15047156 aaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaacaa 15047253  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 29075674 - 29075719
Alignment:
57 atattgtaaaggggaaacccttggaggagagattatctcccattct 102  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
29075674 atattgtgaaggggaaaaccttggaggagagattatctccaattct 29075719  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 31673991 - 31674063
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccat--tctttcctatttcttagtaaaagtgttct 128  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||  | | |||||||| ||| ||||||||||||    
31673991 tattgtgaaggggaaccccttggaggagagattctctcctattatatatcctattttttaataaaagtgttct 31674063  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 21524218 - 21524262
Alignment:
92 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 135  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
21524218 tctcccattctttcctattttcttaataaatgtgttctttctatt 21524262  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 21534778 - 21534822
Alignment:
92 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 135  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
21534778 tctcccattctttcctattttcttaataaatgtgttctttctatt 21534822  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 10525324 - 10525257
Alignment:
58 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 126  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||| ||| |||||||| ||||| ||||    
10525324 tattgtgaaggggaaacccttg-aggagagattttctcgtattctatccaatttcttaataaaattgtt 10525257  T

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