View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10257_9 (Length: 322)
Name: NF10257_9
Description: NF10257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10257_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 26313993 - 26314324
Alignment:
| Q |
1 |
aattaatctccagaactttgagagcaactaaaatttgtatttaaatgtaaagtaaaatttgtctcagaccaattccaaattataggaaagnnnnnnnnta |
100 |
Q |
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| T |
26313993 |
aattaatctccagaactttgagagcaactaaaatttgtatttaaatgtaaagtaaaatttgtctcagaccaattccaaattataggaaagaaaaaataaa |
26314092 |
T |
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| Q |
101 |
----------aataaataatttgaggtatttatgaatgtgtgaagctagcttataatttaattataacagaacatgtaaagctttaggtaaagtctcatg |
190 |
Q |
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| T |
26314093 |
taaataataaaataaataatttgaggtatttataaatgtgtgaagctagcttataatttaattataacagaacatgtaaagctttaggtaaagtctcatg |
26314192 |
T |
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| Q |
191 |
agtagaaaacgataaagcatgcatgttgaattcagttgaaatgaattgagcactttcttccattgaaattttgttgattaattgatgcaaaactctttct |
290 |
Q |
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| T |
26314193 |
agcagaaaacgatggagtatgcatgttgaattcagttgaaatgaattgagcactttcttccattgaaattttgttgattaattgatgcaaaactctttct |
26314292 |
T |
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| Q |
291 |
tgctcttctccatcactccattcataaatttt |
322 |
Q |
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| T |
26314293 |
tgctcttctccatcactccattcataaatttt |
26314324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 43109167 - 43109273
Alignment:
| Q |
216 |
ttgaattcagttgaaatgaattgagcactttcttccattgaaattttgttgattaattgatgcaaaactctttcttgctcttctccatcactccattcat |
315 |
Q |
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| T |
43109167 |
ttgaattcagttgaaatgaattcagcagtttcttccattgatattttgttgattaattgatgcaaaaccctttcttgatcttcaccatcactccattcat |
43109266 |
T |
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| Q |
316 |
aaatttt |
322 |
Q |
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||||||| |
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| T |
43109267 |
aaatttt |
43109273 |
T |
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