View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10257_low_1 (Length: 255)
Name: NF10257_low_1
Description: NF10257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10257_low_1 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: scaffold0055 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 282 - 117
Alignment:
| Q |
74 |
tcaatcacaaattcttcatctctcactcaatctatttcatttcctctcaccctcaatctttgaaaccctaaaacgcaatctcctctctcacaccctctgt |
173 |
Q |
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|||||| |||| |||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| || |
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| T |
282 |
tcaatctcaaaatcttcatctcaccctaaatctctttcatttcctctcaccctcaatctttgaaaccctaaaaagcaatttcctttctcacaccctccgt |
183 |
T |
|
| Q |
174 |
tctccaacagccacgcctccgtgcttctccgccaaccacaccgctgagcctcaatcttgttcaacc |
239 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||| || |||| |||||||||||||||| |
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| T |
182 |
tctccaccagccacgccgccgtgcttctccgccaaccacactgccgagcttcaatcttgttcaacc |
117 |
T |
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Target: scaffold0052 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 84253 - 84418
Alignment:
| Q |
74 |
tcaatcacaaattcttcatctctcactcaatctatttcatttcctctcaccctcaatctttgaaaccctaaaacgcaatctcctctctcacaccctctgt |
173 |
Q |
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|||||| |||| |||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| || |
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| T |
84253 |
tcaatctcaaaatcttcatctcaccctaaatctctttcatttcctctcaccctcaatctttgaaaccctaaaaagcaatttcctttctcacaccctccgt |
84352 |
T |
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| Q |
174 |
tctccaacagccacgcctccgtgcttctccgccaaccacaccgctgagcctcaatcttgttcaacc |
239 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||| || |||| |||||||||||||||| |
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| T |
84353 |
tctccaccagccacgccgccgtgcttctccgccaaccacactgccgagcttcaatcttgttcaacc |
84418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 7206386 - 7206221
Alignment:
| Q |
74 |
tcaatcacaaattcttcatctctcactcaatctatttcatttcctctcaccctcaatctttgaaaccctaaaacgcaatctcctctctcacaccctctgt |
173 |
Q |
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|||||| |||| |||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| || |
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| T |
7206386 |
tcaatctcaaaatcttcatctcaccctaaatctctttcatttcctctcaccctcaatctttgaaaccctaaaaagcaatttcctttctcacaccctccgt |
7206287 |
T |
|
| Q |
174 |
tctccaacagccacgcctccgtgcttctccgccaaccacaccgctgagcctcaatcttgttcaacc |
239 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||| || |||| |||||||||||||||| |
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| T |
7206286 |
tctccaccagccacgccgccgtgcttctccgccaaccacactgccgagcttcaatcttgttcaacc |
7206221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 48009158 - 48009296
Alignment:
| Q |
99 |
ctcaatctatttcatttcctctcaccctcaatctttgaaaccctaaaacgcaatctcctctctcacaccctctgttctccaacagccacgcctccgtgct |
198 |
Q |
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|||||| | ||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||| | |||||| | |||||| |
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| T |
48009158 |
ctcaatatctttcatttcctttcacccttaatctatgaaaccctaaaaagcaatctcctctctcacacccttcgttctccaccggccacgtcgtcgtgct |
48009257 |
T |
|
| Q |
199 |
tctccgccaaccacaccgctgagcctcaatcttgttcaa |
237 |
Q |
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|||||||||||| |||||| ||||||||||||||||||| |
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| T |
48009258 |
tctccgccaacctcaccgccgagcctcaatcttgttcaa |
48009296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39181805 - 39181732
Alignment:
| Q |
1 |
tctagtaatgcatgctcaatttttagatatgtaaacccaaaaatgaaaggacatcattaagcattgacccaaat |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39181805 |
tctagtaatgcatgctcaatttttagatatgtaaacccaaaaatgaaaggacatcattaagcattgacccaaat |
39181732 |
T |
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