View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_high_1 (Length: 334)
Name: NF10258_high_1
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 24648966 - 24649284
Alignment:
| Q |
1 |
gaatagggtaaagagagatcgtgtattgtctgttactatattctgtttctttgaagcaatatttctttgtaccaatagttccttcaacgcgtattttgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648966 |
gaatagggtaaagagagatcgtgtattgtctgttactatattctgtttctttgaagcaatatttctttgtaccaatagttccttcaacgcgtattttgta |
24649065 |
T |
|
| Q |
101 |
tcccttagtgtaatagtagtacgacaatgacagaattaaatatgacacgactactttttcaagtttcatctcttttttgttgggtcatgccaatcgacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24649066 |
tcccttagtgtaatagtagtacgacaatgacagaattaaatatgacacgactactttttcaagtttcatctcttttttgttgggtcatgccaatcgacat |
24649165 |
T |
|
| Q |
201 |
ccccatgacactgaccaagaaagtaaaaacaagtttaaaattgaaaatacatataacttccaatgcattatctattatgtttgtttctttaacaggtgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24649166 |
ccccatgacactgaccaagaaagtaaaaacaagtttaaaattgaaaatacatataacttccaatgcattatctattatgtttgtttctttaacaggtgtg |
24649265 |
T |
|
| Q |
301 |
agagcacctattaacattt |
319 |
Q |
| |
|
||||||||||||||||||| |
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| T |
24649266 |
agagcacctattaacattt |
24649284 |
T |
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